Accession
MI0001140
Description
Oryza sativa
osa-MIR172b precursor miRNA
Gene family
MIPF0000035;
MIR172
Literature search
77 open access papers mention osa-MIR172b
(524 sentences)
(524 sentences)
Sequence
289
reads,
201
reads per million, 2 experiments
gugauuucugacguggcaucaucaagauucacacauuacauugcaugcaugcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcuagcuaauauuucucuccuggcccugaccugcaugaugcaugguugcacgcauggagagagaagagagagaucgaagcuaauuaaacgcauguguauauaugugugGGAAUCUUGAUGAUGCUGCAUcggaaauuaa
.((((((((((.((((((((((((((((((((((((.....((((((((((((((....))))))).....((((.((((((........))))))..))))((((....(((((((((..((...((((((((...)))).))))....))..))))))))).((......))..))))........))))))).....))))))..)))))))))))))))))).)))))))))).
.((((((((((.((((((((((((((((((((((((.....((((((((((((((....))))))).....((((.((((((........))))))..))))((((....(((((((((..((...((((((((...)))).))))....))..))))))))).((......))..))))........))))))).....))))))..)))))))))))))))))).)))))))))).
Structure
g c -- uacau augcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcu ---------aaua ug -ccu - u ugauuucuga guggcaucaucaagauuc acacau ugcaugc agcu uuucucucc gc gacc ugca |||||||||| |||||||||||||||||| |||||| ||||||| |||| ||||||||| || |||| |||| g auuaaaggcU CGUCGUAGUAGUUCUAAG ugugua guguacg ucga agagagagg cg uugg acgu a A Gg uauau ----------------------------------------------caaauuaa agcuagagagaga ua cacg u a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.
Genome context
Chr1: 42923736-42923973 [-]
Database links
Mature osa-miR172b
| Accession | MIMAT0001070 |
| Description | Oryza sativa osa-miR172b mature miRNA |
| Sequence | 208 - GGAAUCUUGAUGAUGCUGCAU - 228 |
| Evidence | not_experimental |
| Database links |
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References
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