Stem-loop osa-MIR171b

Accession

MI0001133

Description

Oryza sativa osa-MIR171b precursor miRNA

Literature search

49 open access papers mention osa-MIR171b
(162 sentences)

Sequence

7086328 reads, 32325.0 reads per million, 142 experiments

gcgacgACGGGAUAUUGGGGCGGUUCAAUCagaaagcuugugcuccggaagcgaggagcucuacucuuuugaUUGAGCCGUGCCAAUAUCACGucgcauc
((((((....((((((((.(((((((((((((((.....(.(((((........))))).).....))))))))))))))).)))))))).))))))...

Structure

---      ACGG        G               agcuu u     gga 
   gcgacg    GAUAUUGG GCGGUUCAAUCagaa     g gcucc   a
   ||||||    |||||||| |||||||||||||||     | |||||    
   cgcuGC    CUAUAACC UGCCGAGUUaguuuu     c cgagg   g
cua      ---A        G               cucau u     agc 

Annotation confidence Medium

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

8: 5369153-5369252 [+]

Mature osa-miR171b-5p

• Accession: MIMAT0055969
• Description: Oryza sativa osa-miR171b-5p mature miRNA
• Sequence: 7 - ACGGGAUAUUGGGGCGGUUCAAUC - 30
• Evidence: experimental ; unknown

Mature osa-miR171b-3p

• Accession: MIMAT0001063
• Description: Oryza sativa osa-miR171b-3p mature miRNA
• Sequence: 73 - UUGAGCCGUGCCAAUAUCACG - 93
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799