Stem-loop osa-MIR162a

Accession

MI0000667

Description

Oryza sativa osa-MIR162a precursor miRNA

Literature search

35 open access papers mention osa-MIR162a
(126 sentences)

Sequence

998649 reads, 5162.0 reads per million, 142 experiments

ggugaugccuGGGCGCAGUGGUUUAUCGAUCccuucccugccuuguggcgcugauccaggagcggcgaauuucuuugagaggguguucuuuuuuuuucuuccuuuugguccuuguugcagccaacgacaacgcgggaaucgaUCGAUAAACCUCUGCAUCCAGuucucgcc
(((((...(((((.((((.((((((((((((..(((((.((.((((.(.((((..(((((((.((.(((.......(((((....))))).....))).))))))))).........))))...).)))).)))))))..)))))))))))).)))).)))))...)))))

Structure

     ugc     C    U            cc     u  c    g --c    -------au       c  c   uuucuuu     g 
gguga   cuGGG GCAG GGUUUAUCGAUC  uuccc gc uugu g   gcug         ccaggag gg gaa       gagag g
|||||   ||||| |||| ||||||||||||  ||||| || |||| |   ||||         ||||||| || |||       |||||  
ccgcu   GACCU CGUC CCAAAUAGCUag  aaggg cg aaca c   cgac         gguuuuc cu cuu       uucuu u
     cuu     A    U            cu     -  c    g aac    guuguuccu       -  u   --uuuuu     g 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

2: 23605799-23605969 [+]

Mature osa-miR162a-5p

• Accession: MIMAT0055908
• Description: Oryza sativa osa-miR162a-5p mature miRNA
• Sequence: 11 - GGGCGCAGUGGUUUAUCGAUC - 31
• Evidence: experimental ; unknown

Mature osa-miR162a-3p

• Accession: MIMAT0000632
• Description: Oryza sativa osa-miR162a-3p mature miRNA
• Sequence: 143 - UCGAUAAACCUCUGCAUCCAG - 163
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626