Stem-loop osa-MIR414

Accession

MI0001434

Description

Oryza sativa osa-MIR414 precursor miRNA

Literature search

21 open access papers mention osa-MIR414
(91 sentences)

Sequence

1106 reads, 7.0 reads per million, 77 experiments

guugccgcugccGUCAUCCUCAUCAUCAUCguccuugcaugaaaccgccagcaaauccuugcgcggggggagggggAAGGGGAGGGGGAGGGGucggaggggcggc
((((((.((.(((((.(((((.((.((.((.(((((.(......((((..((((....)))))))).).))))).)).)).)).)))))..)).))))).))))))

Structure

      g  g   -  -A     A  A  A  g     g augaaa    ca    a 
guugcc cu ccG UC  UCCUC UC UC UC uccuu c      ccgc  gcaa u
|||||| || ||| ||  ||||| || || || ||||| |      ||||  ||||  
cggcgg ga ggc GG  AGGGG AG GG Ag gggag g      ggcg  cguu c
      g  -   u  GG     G  G  A  g     g -----g    --    c 

Annotation confidence Low

Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context

11: 15504891-15504996 [+]

Mature osa-miR414-5p

• Accession: MIMAT0001330
• Description: Oryza sativa osa-miR414-5p mature miRNA
• Sequence: 13 - GUCAUCCUCAUCAUCAUC - 30
• Evidence: not_experimental

Mature osa-miR414-3p

• Accession: MIMAT0055978
• Description: Oryza sativa osa-miR414-3p mature miRNA
• Sequence: 77 - AAGGGGAGGGGGAGGGG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 15345049
   Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
   Wang XJ, Reyes JL, Chua NH, Gaasterland T
   Genome Biol (2004) 5:R65


2. PubMed ID: 16669754
   MicroRNAS and their regulatory roles in plants
   "Jones-Rhoades MW, Bartel DP, Bartel B"
   "Annu Rev Plant Biol (2006) 57:19-53