Dead hairpin entry

Stem-loop ath-MIR417

Accession

MI0001428

Description

Arabidopsis thaliana ath-MIR417 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

4 open access papers mention ath-MIR417
(9 sentences)

Sequence

16 reads, 2.0 reads per million, 11 experiments

aaauauauucaaaaguggucaaaacacgucacuauuuccuuuauguuuuccccuuauugauggaaaugguuaaacauGAAGGUAGUGAAUUUGUUCGAauaauauguugauauauuu
((((((((.(((..(((.....((((..((((((...(((((((((((.((((........))....))..)))))))))))))))))...)))).......))).)))))))))))

Structure

        u   aa   --gucaa    -cg      uuu           -u  ----  uua 
aaauauau caa  gug       aaca   ucacua   ccuuuauguuu  cc    cc   u
|||||||| |||  |||       ||||   ||||||   |||||||||||  ||    ||    
uuuauaua guu  uau       UUGU   AGUGAU   GGAAGuacaaa  gg    gg   u
        -   -g   aauaAGC    UUA      ---           uu  uaaa  uag