Stem-loop ath-MIR417

Accession

MI0001428

Description

Arabidopsis thaliana ath-MIR417 precursor miRNA

Literature search

3 open access papers mention ath-MIR417
(3 sentences)

Sequence

aaauauauucaaaaguggucaaaacacgucacuauuuccuuuauguuuuccccuuauugauggaaaugguuaaacauGAAGGUAGUGAAUUUGUUCGAauaauauguugauauauuu
((((((((.(((..(((.....((((..((((((...(((((((((((.((((........))....))..)))))))))))))))))...)))).......))).)))))))))))

Structure

        u   aa   --gucaa    -cg      uuu           -u  ----  uua 
aaauauau caa  gug       aaca   ucacua   ccuuuauguuu  cc    cc   u
|||||||| |||  |||       ||||   ||||||   |||||||||||  ||    ||    
uuuauaua guu  uau       UUGU   AGUGAU   GGAAGuacaaa  gg    gg   u
        -   -g   aauaAGC    UUA      ---           uu  uaaa  uag 

Annotation confidence Not enough data

Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context

chr2: 13708748-13708864 [-]

Mature ath-miR417

• Accession: MIMAT0001325
• Description: Arabidopsis thaliana ath-miR417 mature miRNA
• Sequence: 78 - GAAGGUAGUGAAUUUGUUCGA - 98
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 15345049
   Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
   Wang XJ, Reyes JL, Chua NH, Gaasterland T
   Genome Biol (2004) 5:R65


2. PubMed ID: 16669754
   MicroRNAS and their regulatory roles in plants
   "Jones-Rhoades MW, Bartel DP, Bartel B"
   "Annu Rev Plant Biol (2006) 57:19-53