Stem-loop ath-MIR416

Accession

MI0001427

Description

Arabidopsis thaliana ath-MIR416 precursor miRNA

Literature search

1 open access papers mention ath-MIR416
(2 sentences)

Sequence

6932 reads, 66.0 reads per million, 170 experiments

cgaAACUGAACCCGGUUUGUACGUAuggaccgcgucguuggaauccaaaagaaccaGGUUCGUACGUACACUGUUCAucg
(((...(((((..(((..(((((((((((((...((.((((...))))..))....))))))))))))))))))))))))

Structure

   AAC     CC   UU             -gcg  -g    a 
cga   UGAAC  GGU  GUACGUAuggacc    uc  uugg  
|||   |||||  |||  |||||||||||||    ||  |||| a
gcu   ACUUG  UCA  CAUGCAUGCUUGG    ag  aacc  
   ---     --   --             acca  aa    u 

Annotation confidence Medium

Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context

chr2: 7008520-7008599 [+]

Mature ath-miR416-5p

• Accession: MIMAT0053848
• Description: Arabidopsis thaliana ath-miR416-5p mature miRNA
• Sequence: 4 - AACUGAACCCGGUUUGUACGUA - 25
• Evidence: experimental ; unknown

Mature ath-miR416-3p

• Accession: MIMAT0001324
• Description: Arabidopsis thaliana ath-miR416-3p mature miRNA
• Sequence: 57 - GGUUCGUACGUACACUGUUCA - 77
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 15345049
   Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
   Wang XJ, Reyes JL, Chua NH, Gaasterland T
   Genome Biol (2004) 5:R65


2. PubMed ID: 16669754
   MicroRNAS and their regulatory roles in plants
   "Jones-Rhoades MW, Bartel DP, Bartel B"
   "Annu Rev Plant Biol (2006) 57:19-53