Stem-loop ath-MIR413

Accession

MI0001424

Description

Arabidopsis thaliana ath-MIR413 precursor miRNA

Literature search

1 open access papers mention ath-MIR413
(2 sentences)

Sequence

gauccAUAGUUUCUCUUGUUCUGCACauccacuaacuucaggaaccaugucccaguuucagguuagaucaagugggaaaacaaauggaagauuguggcuaugcagaaacuggaacuauucguc
(((..((((((((.....(((((((...((((...((((..........(((((.((((......))..)).))))).........))))...))))...)))))))...))))))))..)))

Structure

   cc        UCUUG       Cau    uaa    aggaaccaug     g  --  ag 
gau  AUAGUUUC     UUCUGCA   ccac   cuuc          uccca uu  uc  g
|||  ||||||||     |||||||   ||||   ||||          ||||| ||  ||   
cug  uaucaagg     aagacgu   ggug   gaag          agggu aa  ag  u
   cu        --uca       auc    uua    -guaaacaaa     g  cu  au 

Annotation confidence Not enough data

Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context

chr1: 23058034-23058156 [+]

Mature ath-miR413

• Accession: MIMAT0001321
• Description: Arabidopsis thaliana ath-miR413 mature miRNA
• Sequence: 6 - AUAGUUUCUCUUGUUCUGCAC - 26
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 15345049
   Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
   Wang XJ, Reyes JL, Chua NH, Gaasterland T
   Genome Biol (2004) 5:R65


2. PubMed ID: 16669754
   MicroRNAS and their regulatory roles in plants
   "Jones-Rhoades MW, Bartel DP, Bartel B"
   "Annu Rev Plant Biol (2006) 57:19-53