Stem-loop sequence ath-MIR164b

Accession

MI0000198 (change log)

Description

Arabidopsis thaliana miR164b stem-loop

Gene family

MIPF0000045; MIR164

Literature search

43 open access papers mention ath-MIR164b
(255 sentences)

Stem-loop

        a    ca         cauu          a    ----   u    c    --a      g     a     a 
5' gaugg gaag  gggcacgug    acuagcucau uaua    cac cuca caca   augcgu uauau ugcgg a
   ||||| ||||  |||||||||    |||||||||| ||||    ||| |||| ||||   |||||| ||||| |||||  
3' cuacc cuuc  cccguguac    ugauugagua guau    gug gagu gugu   ugugua auaua guguu u
        a    ua         uucu          g    agua   u    u    gug      g     -     u 

Confidence

Annotation confidence: not enough data

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Comments

MIR164b is thought to target mRNAs coding for NAC domain containing proteins such as Cup-Shaped Cotyledon 2 (CUC2) which is required for shoot apical meristem formation [2].

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 287584-287736 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000078C15C_3702
• miRBase Tracker:MI0000198

Mature sequence ath-miR164b-5p

• Accession: MIMAT0000186
• Previous IDs: ath-miR164b
• Sequence: 3 - uggagaagcagggcacgugca - 23
• Evidence: experimental; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

Mature sequence ath-miR164b-3p

• Accession: MIMAT0031878
• Sequence: 133 - caugugcccaucuucaccauc - 153
• Evidence: not experimental

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:12202040 "Prediction of plant microRNA targets" Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP Cell. 110:513-520(2002).
3. PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
4. PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
5. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
6. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).