Accession
MI0000211
Description
Arabidopsis thaliana
ath-MIR168b precursor miRNA
Literature search
28 open access papers mention ath-MIR168b
(78 sentences)
(78 sentences)
Sequence
uuaccggcggucucggauUCGCUUGGUGCAGGUCGGGAAcugauuggcugacaccgacacgugucuugucaugguugguuugugagcuCCCGUCUUGUAUCAACUGAAUcggaguccgagguga
(((((..(((.(((.((((((.((((((((((.(((((........(((.((((((((.((((......))))))))))..)).)))))))).)))))))))).)))))).))).))).)))))
(((((..(((.(((.((((((.((((((((((.(((((........(((.((((((((.((((......))))))))))..)).)))))))).)))))))))).)))))).))).))).)))))
Structure
gg u g C U Acugauug g -- a uc
uuacc cgg cuc gauUCG UUGGUGCAGG CGGGA gcu ac accgac cgug u
||||| ||| ||| |||||| |||||||||| ||||| ||| || |||||| ||||
agugg gcc gag cUAAGU AACUAUGUUC GCCCu cga ug ugguug guac u
-a u g C U -------- g uu - ug
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR168b thought to target mRNAs coding for Argonaute (AGO1), which is required for axillary shoot meristem formation and leaf development in Arabidopsis. It has been suggested that AGO1 may also influence miRNA accumulation in plants and that miR168 may act as a negative-feedback mechanism for controlling expression of the AGO1 gene [2].
Genome context
chr5: 18358788-18358911 [-]
Database links
Mature ath-miR168b-5p
| Accession | MIMAT0000199 |
| Description | Arabidopsis thaliana ath-miR168b-5p mature miRNA |
| Sequence | 19 - UCGCUUGGUGCAGGUCGGGAA - 39 |
| Evidence |
experimental
cloned [1,3], Northern [1], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR168b-3p
| Accession | MIMAT0031885 |
| Description | Arabidopsis thaliana ath-miR168b-3p mature miRNA |
| Sequence | 89 - CCCGUCUUGUAUCAACUGAAU - 109 |
| Evidence | not_experimental |
References
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