miRBase entry: mmu-mir-200b

Stem-loop mmu-mir-200b


Accession
MI0000243
Symbol
MGI: Mir200b
Description
Mus musculus mmu-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
294 open access papers mention mmu-mir-200b
(2366 sentences)

Sequence

152946 reads, 674 reads per million, 99 experiments
gccguggcCAUCUUACUGGGCAGCAUUGGAuagugucugaucucUAAUACUGCCUGGUAAUGAUGAcggc
(((((...(((((((((((((((.((((((.(........).)))))).))))))))))).)))))))))

Structure
     ggc    -           C      u gug 
gccgu   CAUC UUACUGGGCAG AUUGGA a   u
|||||   |||| ||||||||||| |||||| |    
cggcA   GUAG AAUGGUCCGUC UAAUcu u   c
     ---    U           A      c agu 


Annotation confidence High
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Genome context
chr4: 156055681-156055750 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-200b-5p

Accession MIMAT0004545
Description Mus musculus mmu-miR-200b-5p mature miRNA
Sequence 9 - CAUCUUACUGGGCAGCAUUGGA - 30
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-200b-3p

Accession MIMAT0000233
Description Mus musculus mmu-miR-200b-3p mature miRNA
Sequence 45 - UAAUACUGCCUGGUAAUGAUGA - 66
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009