Search results

mir-8 family (RF00241)

Summary
miR-8 from Drosophila [1] (MIR:MI0000128) and human and mouse mir-141 (MIR:MI0000166, MIR:MI0000457), mir-429 (MIR:MI0001642) and mir-200 (MIR:MI0000243, MIR:MI0000342) [2] are expressed from the 3' arm of related precursor hairpins (represented here). Members of this precursor family have now been predicted or experimentally confirmed in a wide range of species (MIPF:MIPF0000019). The bounds of the precursors are predicted based on conservation and base pairing and are not generally known.

There are 164 hairpins in the mir-8 family

Name Accession RPM Chromosome Start End Strand Confidence
dme-mir-8 MI0000128 57465 chr2R 16831432 16831518 + High
mmu-mir-141 MI0000166 886 6 124694877 124694948 - High
mmu-mir-200b MI0000243 674 4 156140138 156140207 - High
hsa-mir-200b MI0000342 1272 chr1 1167104 1167198 + High
hsa-mir-141 MI0000457 931 chr12 6964097 6964191 + High
mmu-mir-200a MI0000554 996 4 156139353 156139442 - High
hsa-mir-200c MI0000650 2318 chr12 6963699 6963766 + High
mmu-mir-200c MI0000694 615 6 124695285 124695353 - High
hsa-mir-200a MI0000737 1523 chr1 1167863 1167952 + High
rno-mir-141 MI0000914 1479 chr4 157236346 157236439 - High
rno-mir-200c MI0000942 287 chr4 157236786 157236854 - High
rno-mir-200a MI0000943 690 chr5 173489366 173489454 - High
rno-mir-200b MI0000944 904 chr5 173490144 173490238 - High
gga-mir-200a MI0001249 1057 21 2591127 2591213 - High
gga-mir-200b MI0001250 1057 21 2593452 2593536 - High
dps-mir-8 MI0001303 - ref|NC_046680.1| 14955760 14955846 + High
ame-mir-8 MI0001595 - CM000057.5 12492063 12492147 - High
aga-mir-8 MI0001630 - ref|NC_064602.1| 96156265 96156350 + High
hsa-mir-429 MI0001641 318 chr1 1169005 1169087 + High
mmu-mir-429 MI0001642 420 4 156138362 156138444 - High
rno-mir-429 MI0001643 666 chr5 173488331 173488415 - -
cfa-mir-429 MI0001644 - 5 56573406 56573490 + -
dre-mir-429a MI0001720 1468 chr23 24073815 24073896 + High
dre-mir-141 MI0002004 1862 chr6 40656003 40656085 - High
dre-mir-200a MI0002037 2693 chr23 24072160 24072245 + High
dre-mir-200b MI0002038 2577 chr23 24072029 24072110 + High
dre-mir-200c MI0002039 1047 chr6 40656204 40656288 - High
mml-mir-200c MI0002484 458 11 7137065 7137132 + High
mml-mir-141 MI0002485 140 11 7137462 7137556 + High
ggo-mir-200c MI0002486 - chr12 7040141 7040207 + -
ggo-mir-141 MI0002487 - chr12 7040537 7040631 + -
ppy-mir-200c MI0002488 - chr12 7199699 7199766 + -
ppy-mir-141 MI0002489 - chr12 7200096 7200190 + -
fru-mir-429 MI0003301 - ref|NC_042287.1| 3943549 3943624 - -
tni-mir-429 MI0003302 - Un_random 2992653 2992739 + -
fru-mir-200a MI0003303 - ref|NC_042287.1| 3944734 3944816 - High
tni-mir-200a MI0003304 - Un_random 2991451 2991512 + -
fru-mir-200b MI0003305 - ref|NC_042287.1| 3944908 3944984 - High
tni-mir-200b MI0003306 - Un_random 2991281 2991357 + -
gga-mir-429 MI0003714 421 21 2588623 2588706 - High
xtr-mir-200a MI0004945 - 7 87890107 87890195 - High
xtr-mir-200b MI0004946 - 7 87891785 87891873 - High
xtr-mir-429 MI0004956 - 7 87887282 87887368 - -
bmo-mir-8 MI0004971 4919 dbj|BSVE01000010.1| 253793 253894 + High
bta-mir-200a MI0005037 1139 16 51322680 51322765 - High
bta-mir-200c MI0005038 381 5 103499257 103499321 - High
bta-mir-200b MI0005055 309 16 51323348 51323406 - High
mdo-mir-200c MI0005339 333 ref|NC_077234.2| 121160276 121160343 - High
mdo-mir-141 MI0005340 192 ref|NC_077234.2| 121159870 121159933 - High
mdo-mir-200b MI0005345 528 ref|NC_077230.1| 415665270 415665337 - High
mdo-mir-200a MI0005346 605 ref|NC_077230.1| 415662584 415662669 - High
oan-mir-200a MI0006744 246 5 56177367 56177480 + High
oan-mir-200b MI0006745 592 5 56175553 56175661 + High
oan-mir-429 MI0006862 299 5 56180384 56180495 + High
mml-mir-200a MI0007663 436 1 223252502 223252591 - High
mml-mir-429 MI0007742 304 1 223251438 223251520 - High
cfa-mir-200c MI0008070 - 27 38434697 38434759 - High
ptr-mir-141 MI0008541 - chr12 7286482 7286575 + -
ptr-mir-200a MI0008573 - chr1 355944 356032 + -
tca-mir-8 MI0008898 - ref|NC_007424.3| 8781909 8781981 - High
dan-mir-8 MI0008945 - ref|NW_001939294.1| 13876646 13876733 - -
der-mir-8 MI0009037 - scaffold_4845 13131131 13131217 - High
dgr-mir-8 MI0009134 - scaffold_15245 3783138 3783228 - -
dmo-mir-8 MI0009201 - ref|NW_001979114.1| 16285337 16285426 + -
dpe-mir-8 MI0009264 - scaffold_4 6545765 6545851 + -
dse-mir-8 MI0009334 - scaffold_1 10223808 10223894 + High
dsi-mir-8 MI0009456 - ref|NT_479534.1| 13389965 13390051 + High
dvi-mir-8 MI0009522 - scaffold_12875 10672395 10672485 - High
dwi-mir-8 MI0009580 - scf2_1100000004513 6381486 6381577 + -
dya-mir-8 MI0009639 - chr2R 16257233 16257319 - -
bta-mir-141 MI0009742 5793 5 103498826 103498915 - High
bta-mir-429 MI0009829 551 16 51321445 51321528 - High
bfl-mir-200a MI0010035 - ref|NC_049992.1| 3180199 3180299 - -
bfl-mir-200b MI0010036 - ref|NC_049992.1| 3174666 3174763 - -
bfl-mir-200c MI0010037 - ref|NC_049992.1| 3177463 3177557 - -
cte-mir-8 MI0010051 - KB309117.1 60503 60600 + -
lgi-mir-8 MI0010104 - KB202283.1 826418 826515 + -
sko-mir-200 MI0010147 - GL011827.1 167988 168088 + -
spu-mir-200 MI0010188 - gb|AAGJ06000016.1| 25257940 25258020 - -
cfa-mir-200b MI0010361 - 5 56571297 56571376 + Medium
cfa-mir-200a MI0010362 - 5 56571960 56572049 + High
cfa-mir-141 MI0010374 - 27 38434268 38434353 - High
lmi-mir-8 MI0010646 - None None -
dre-mir-429b MI0010836 59 chr6 40653129 40653238 - High
dpu-mir-8 MI0012250 - GL732653.1 139386 139483 + -
isc-mir-8 MI0012286 - ref|NW_024609846.1| 79744137 79744230 - -
mdo-mir-429 MI0012497 110 ref|NC_077230.1| 415656656 415656727 - High
eca-mir-200a MI0012665 3 2 48713802 48713891 - High
eca-mir-200b MI0012666 3 2 48714468 48714536 - High
eca-mir-429 MI0012675 1 2 48712423 48712489 - High
eca-mir-141 MI0012723 3 6 35439079 35439150 + High
eca-mir-200c MI0012727 0 6 35438670 35438733 + High
aae-mir-8 MI0013437 10753 ref|NW_001811143.1| 876043 876121 + High
cqu-mir-8 MI0013602 - supercont3.40 815858 815934 - -
tgu-mir-200a MI0013759 - chr21 5894308 5894400 + -
tgu-mir-200b MI0013820 - chr21 5892896 5892968 + -
api-mir-8 MI0013939 - GL349795.1 1044256 1044318 - High
nvi-mir-8 MI0014759 - GL341022.2 2300960 2301045 - -
ppy-mir-200a MI0014861 - chr1 229422413 229422500 - -
ppy-mir-429 MI0014942 - chr1 229421350 229421429 - -
sja-mir-8 MI0015286 - CABF01051237.1 644 719 + -
nlo-mir-8 MI0016678 - None None -
pma-mir-200b MI0017103 - ref|NC_046107.1| 8650248 8650325 + -
pma-mir-429-1 MI0017129 - ref|NC_046107.1| 8664744 8664831 + -
ssc-mir-429 MI0017991 11 chr6 58044174 58044254 - High
aca-mir-200a MI0018802 - GL343647.1 276643 276735 + High
aca-mir-200b MI0018803 - GL343647.1 274634 274733 + High
aca-mir-429 MI0018866 - GL343647.1 283324 283423 + -
ola-mir-200a MI0019448 - 7 217696 217792 - High
ola-mir-200b MI0019449 - 7 217985 218082 - High
sha-mir-200b MI0019631 - GL849763.1 160073 160222 + -
sha-mir-200a MI0019632 - GL849763.1 162393 162542 + -
sha-mir-200c MI0019653 - GL861612.1 2158021 2158170 + -
sha-mir-141 MI0019654 - GL861612.1 2158436 2158585 + -
cgr-mir-141 MI0020403 50 JH000031.1 4002691 4002780 + High
cgr-mir-200b MI0020452 65 JH001219.1 151410 151499 + High
cgr-mir-200c MI0020453 104 JH000031.1 4002276 4002365 + High
cgr-mir-429 MI0020525 42 JH001219.1 153203 153292 + Medium
ptr-mir-200c MI0020598 - chr12 7286057 7286165 + -
ggo-mir-200b MI0020847 - chr1 808769 808879 + Medium
ggo-mir-200a MI0020848 - chr1 809523 809633 + -
ggo-mir-429 MI0020852 - chr1 810595 810705 + -
mse-mir-8 MI0021005 - JH668821.1 81406 81508 - -
hme-mir-8 MI0021785 - HE670477 58586 58672 + -
sma-mir-8 MI0021831 - 1 14354974 14355049 - -
ccr-mir-200a MI0023361 - None None High
ccr-mir-200b MI0023362 - None None High
ccr-mir-429 MI0023397 - None None High
ipu-mir-141 MI0024506 - None None -
ipu-mir-200a MI0024554 - None None -
ipu-mir-200b MI0024555 - None None -
ipu-mir-200c MI0024556 - None None -
ipu-mir-429a MI0024630 - None None -
ipu-mir-429b MI0024631 - None None -
pmi-mir-200 MI0025113 - ref|NW_024037063.1| 18377231 18377317 - -
lva-mir-200 MI0025159 - None None -
oar-mir-200a MI0025264 6864 chr12 49326773 49326858 - High
oar-mir-200b MI0025265 2714 chr12 49327356 49327414 - High
oar-mir-200c MI0025266 2366 chr3 207226030 207226094 - High
bbe-mir-200a MI0026195 - None None High
bbe-mir-200b MI0026196 - None None High
bbe-mir-200c MI0026197 - None None High
ssa-mir-200a-1 MI0026581 - None None High
ssa-mir-200a-2 MI0026582 - None None High
ssa-mir-200a-3 MI0026583 - None None High
ssa-mir-200b-1 MI0026584 - None None High
ssa-mir-200b-2 MI0026585 - None None High
ssa-mir-429 MI0026698 - None None High
efu-mir-200b MI0028697 - JH977681.1 208041 208120 + High
efu-mir-200a MI0028698 - JH977681.1 208600 208681 + High
efu-mir-429 MI0028699 - JH977681.1 209798 209876 + High
efu-mir-200c MI0028789 - JH977638.1 17349898 17349980 + -
efu-mir-141 MI0028790 - JH977638.1 17350306 17350390 + -
chi-mir-141 MI0030628 - chr5 104155114 104155203 - High
chi-mir-200a MI0030679 - AJPT02077529.1 1264 1351 - High
chi-mir-200b MI0030680 - chr16 51960891 51960970 - High
chi-mir-200c MI0030681 - chr5 104155533 104155618 - High
chi-mir-429 MI0030791 - AJPT02077529.1 34 117 - -
tch-mir-200a MI0031125 - KB364377.1 9043899 9043957 + High
tch-mir-200c MI0031132 - KB369804.1 350362 350424 - High
tch-mir-141 MI0031147 - KB369804.1 349690 349754 - High
tch-mir-200b MI0031282 - KB364377.1 9043059 9043116 + High
oha-mir-200a MI0031401 - AZIM01000256.1 133883 133980 + -
oha-mir-429 MI0031469 - AZIM01000256.1 137861 137949 + -



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