Search results

mir-8 family in Rfam (RF00241)

Summary
miR-8 from Drosophila [1] (MIR:MI0000128) and human and mouse mir-141 (MIR:MI0000166, MIR:MI0000457), mir-429 (MIR:MI0001642) and mir-200 (MIR:MI0000243, MIR:MI0000342) [2] are expressed from the 3' arm of related precursor hairpins (represented here). Members of this precursor family have now been predicted or experimentally confirmed in a wide range of species (MIPF:MIPF0000019). The bounds of the precursors are predicted based on conservation and base pairing and are not generally known.
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5'

There are 164 hairpins in the mir-8 family

Name Accession RPM Chromosome Start End Strand Confidence
dme-mir-8 MI0000128 57465 chr2R 16831432 16831518 + High
mmu-mir-141 MI0000166 886 chr6 124717914 124717985 - -
mmu-mir-200b MI0000243 674 chr4 156055681 156055750 - High
hsa-mir-200b MI0000342 1272 chr1 1167104 1167198 + -
hsa-mir-141 MI0000457 931 chr12 6964097 6964191 + High
mmu-mir-200a MI0000554 996 chr4 156054896 156054985 - High
hsa-mir-200c MI0000650 2318 chr12 6963699 6963766 + High
mmu-mir-200c MI0000694 615 chr6 124718322 124718390 - High
hsa-mir-200a MI0000737 1523 chr1 1167863 1167952 + High
rno-mir-141 MI0000914 1479 chr4 157236346 157236439 - High
rno-mir-200c MI0000942 287 chr4 157236786 157236854 - High
rno-mir-200a MI0000943 690 chr5 173489366 173489454 - High
rno-mir-200b MI0000944 904 chr5 173490144 173490238 - High
gga-mir-200a MI0001249 1057 chr21 2591937 2592023 - High
gga-mir-200b MI0001250 1057 chr21 2594262 2594346 - High
dps-mir-8 MI0001303 - Unknown_singleton_1898 47552 47638 - -
ame-mir-8 MI0001595 - CM000057.5 12492063 12492147 - -
aga-mir-8 MI0001630 - chr3L 38943045 38943130 + -
hsa-mir-429 MI0001641 318 chr1 1169005 1169087 + High
mmu-mir-429 MI0001642 420 chr4 156053905 156053987 - High
rno-mir-429 MI0001643 666 chr5 173488331 173488415 - -
cfa-mir-429 MI0001644 - chr5 56370509 56370593 + -
dre-mir-429a MI0001720 1468 chr23 24073815 24073896 + -
dre-mir-141 MI0002004 1862 chr6 40656003 40656085 - High
dre-mir-200a MI0002037 2693 chr23 24072160 24072245 + High
dre-mir-200b MI0002038 2577 chr23 24072029 24072110 + High
dre-mir-200c MI0002039 1047 chr6 40656204 40656288 - High
mml-mir-200c MI0002484 458 chr11 7280477 7280544 + -
mml-mir-141 MI0002485 140 chr11 7280874 7280968 + High
ggo-mir-200c MI0002486 - chr12 7040141 7040207 + -
ggo-mir-141 MI0002487 - chr12 7040537 7040631 + -
ppy-mir-200c MI0002488 - chr12 7199699 7199766 + -
ppy-mir-141 MI0002489 - chr12 7200096 7200190 + -
fru-mir-429 MI0003301 - HE602537.1 1331221 1331296 - -
tni-mir-429 MI0003302 - Un_random 2992653 2992739 + -
fru-mir-200a MI0003303 - HE602537.1 1332406 1332488 - -
tni-mir-200a MI0003304 - Un_random 2991451 2991512 + -
fru-mir-200b MI0003305 - HE602537.1 1332580 1332656 - -
tni-mir-200b MI0003306 - Un_random 2991281 2991357 + -
gga-mir-429 MI0003714 421 chr21 2589432 2589515 - High
xtr-mir-200a MI0004945 - chr7 78800601 78800689 - -
xtr-mir-200b MI0004946 - chr7 78802277 78802365 - -
xtr-mir-429 MI0004956 - chr7 78797776 78797862 - -
bmo-mir-8 MI0004971 4919 NW_004582017.1 79866 79967 + High
bta-mir-200a MI0005037 1139 chr16 52694578 52694663 - High
bta-mir-200c MI0005038 381 chr5 104150173 104150237 - High
bta-mir-200b MI0005055 309 chr16 52695246 52695304 - High
mdo-mir-200c MI0005339 333 chr8 108475449 108475516 + High
mdo-mir-141 MI0005340 192 chr8 108475859 108475922 + High
mdo-mir-200b MI0005345 528 chr4 389166960 389167027 + High
mdo-mir-200a MI0005346 605 chr4 389169611 389169696 + High
oan-mir-200a MI0006744 246 Contig19080 5482 5595 - High
oan-mir-200b MI0006745 592 Contig19080 7770 7878 - High
oan-mir-429 MI0006862 299 Ultra168 328495 328606 + High
mml-mir-200a MI0007663 436 chr1 259981 260070 + High
mml-mir-429 MI0007742 304 chr1 261052 261134 + -
cfa-mir-200c MI0008070 - chr27 38082097 38082159 - -
ptr-mir-141 MI0008541 - chr12 7286482 7286575 + -
ptr-mir-200a MI0008573 - chr1 355944 356032 + -
tca-mir-8 MI0008898 - None None -
dan-mir-8 MI0008945 - scaffold_13266 13876646 13876733 - -
der-mir-8 MI0009037 - scaffold_4845 13131131 13131217 - -
dgr-mir-8 MI0009134 - scaffold_15245 3783138 3783228 - -
dmo-mir-8 MI0009201 - scaffold_6496 16285337 16285426 + -
dpe-mir-8 MI0009264 - scaffold_4 6545765 6545851 + -
dse-mir-8 MI0009334 - scaffold_1 10223808 10223894 + -
dsi-mir-8 MI0009456 - chr2R 11454623 11454709 + -
dvi-mir-8 MI0009522 - scaffold_12875 10672395 10672485 - -
dwi-mir-8 MI0009580 - scf2_1100000004513 6381486 6381577 + -
dya-mir-8 MI0009639 - chr2R 16257233 16257319 - -
bta-mir-141 MI0009742 5793 chr5 104149742 104149831 - High
bta-mir-429 MI0009829 551 chr16 52693343 52693426 - -
bfl-mir-200a MI0010035 - GG666627.1 361501 361601 - -
bfl-mir-200b MI0010036 - GG666627.1 355968 356065 - -
bfl-mir-200c MI0010037 - GG666627.1 358765 358859 - -
cte-mir-8 MI0010051 - KB309117.1 60503 60600 + -
lgi-mir-8 MI0010104 - KB202283.1 826418 826515 + -
sko-mir-200 MI0010147 - GL011827.1 167988 168088 + -
spu-mir-200 MI0010188 - KN920481.1 158992 159072 - -
cfa-mir-200b MI0010361 - chr5 56368400 56368479 + -
cfa-mir-200a MI0010362 - chr5 56369063 56369152 + -
cfa-mir-141 MI0010374 - chr27 38081668 38081753 - -
lmi-mir-8 MI0010646 - None None -
dre-mir-429b MI0010836 59 chr6 40653129 40653238 - -
dpu-mir-8 MI0012250 - GL732653.1 139386 139483 + -
isc-mir-8 MI0012286 - DS755496 12152 12245 - -
mdo-mir-429 MI0012497 110 chr4 389175425 389175496 + High
eca-mir-200a MI0012665 3 chr2 48454404 48454493 - -
eca-mir-200b MI0012666 3 chr2 48455071 48455139 - -
eca-mir-429 MI0012675 1 chr2 48453025 48453091 - -
eca-mir-141 MI0012723 3 chr6 34423490 34423561 + -
eca-mir-200c MI0012727 0 chr6 34423081 34423144 + -
aae-mir-8 MI0013437 10753 supercont1.411 876043 876121 + High
cqu-mir-8 MI0013602 - supercont3.40 815858 815934 - -
tgu-mir-200a MI0013759 - chr21 5894308 5894400 + -
tgu-mir-200b MI0013820 - chr21 5892896 5892968 + -
api-mir-8 MI0013939 - GL349795.1 1044256 1044318 - -
nvi-mir-8 MI0014759 - GL341022.2 2300960 2301045 - -
ppy-mir-200a MI0014861 - chr1 229422413 229422500 - -
ppy-mir-429 MI0014942 - chr1 229421350 229421429 - -
sja-mir-8 MI0015286 - CABF01051237.1 644 719 + -
nlo-mir-8 MI0016678 - None None -
pma-mir-200b MI0017103 - None None -
pma-mir-429 MI0017129 - None None -
ssc-mir-429 MI0017991 11 chr6 58044174 58044254 - -
aca-mir-200a MI0018802 - GL343647.1 276643 276735 + -
aca-mir-200b MI0018803 - GL343647.1 274634 274733 + -
aca-mir-429 MI0018866 - GL343647.1 283324 283423 + -
ola-mir-200a MI0019448 - 7 217696 217792 - -
ola-mir-200b MI0019449 - 7 217985 218082 - -
sha-mir-200b MI0019631 - GL849763.1 160073 160222 + -
sha-mir-200a MI0019632 - GL849763.1 162393 162542 + -
sha-mir-200c MI0019653 - GL861612.1 2158021 2158170 + -
sha-mir-141 MI0019654 - GL861612.1 2158436 2158585 + -
cgr-mir-141 MI0020403 50 JH000031.1 4002691 4002780 + Low
cgr-mir-200b MI0020452 65 JH001219.1 151410 151499 + Low
cgr-mir-200c MI0020453 104 JH000031.1 4002276 4002365 + Low
cgr-mir-429 MI0020525 42 JH001219.1 153203 153292 + Low
ptr-mir-200c MI0020598 - chr12 7286057 7286165 + -
ggo-mir-200b MI0020847 - chr1 808769 808879 + -
ggo-mir-200a MI0020848 - chr1 809523 809633 + -
ggo-mir-429 MI0020852 - chr1 810595 810705 + -
mse-mir-8 MI0021005 - JH668821.1 81406 81508 - -
hme-mir-8 MI0021785 - HE670477 58586 58672 + -
sma-mir-8 MI0021831 - Chr_1 10044867 10044942 - -
ccr-mir-200a MI0023361 - None None -
ccr-mir-200b MI0023362 - None None -
ccr-mir-429 MI0023397 - None None -
ipu-mir-141 MI0024506 - None None -
ipu-mir-200a MI0024554 - None None -
ipu-mir-200b MI0024555 - None None -
ipu-mir-200c MI0024556 - None None -
ipu-mir-429a MI0024630 - None None -
ipu-mir-429b MI0024631 - None None -
pmi-mir-200 MI0025113 - None None -
lva-mir-200 MI0025159 - None None -
oar-mir-200a MI0025264 6864 chr12 49326773 49326858 - -
oar-mir-200b MI0025265 2714 chr12 49327356 49327414 - -
oar-mir-200c MI0025266 2366 chr3 207226030 207226094 - -
bbe-mir-200a MI0026195 - None None -
bbe-mir-200b MI0026196 - None None -
bbe-mir-200c MI0026197 - None None -
ssa-mir-200a-1 MI0026581 - None None -
ssa-mir-200a-2 MI0026582 - None None -
ssa-mir-200a-3 MI0026583 - None None -
ssa-mir-200b-1 MI0026584 - None None -
ssa-mir-200b-2 MI0026585 - None None -
ssa-mir-429 MI0026698 - None None -
efu-mir-200b MI0028697 - JH977681.1 208041 208120 + -
efu-mir-200a MI0028698 - JH977681.1 208600 208681 + -
efu-mir-429 MI0028699 - JH977681.1 209798 209876 + -
efu-mir-200c MI0028789 - JH977638.1 17349898 17349980 + -
efu-mir-141 MI0028790 - JH977638.1 17350306 17350390 + -
chi-mir-141 MI0030628 - chr5 104155114 104155203 - -
chi-mir-200a MI0030679 - AJPT02077529.1 1264 1351 - -
chi-mir-200b MI0030680 - chr16 51960891 51960970 - -
chi-mir-200c MI0030681 - chr5 104155533 104155618 - -
chi-mir-429 MI0030791 - AJPT02077529.1 34 117 - -
tch-mir-200a MI0031125 - KB364377.1 9043899 9043957 + -
tch-mir-200c MI0031132 - KB369804.1 350362 350424 - -
tch-mir-141 MI0031147 - KB369804.1 349690 349754 - -
tch-mir-200b MI0031282 - KB364377.1 9043059 9043116 + -
oha-mir-200a MI0031401 - AZIM01000256.1 133883 133980 + -
oha-mir-429 MI0031469 - AZIM01000256.1 137861 137949 + -



Comments or questions? Email mirbase@manchester.ac.uk