Stem-loop fru-mir-200a

Accession

MI0003303

Description

Fugu rubripes fru-mir-200a precursor miRNA

Literature search

2 open access papers mention fru-mir-200a
(3 sentences)

Sequence

1533780 reads, 20208.0 reads per million, 12 experiments

ucucaggaucCAUCUUACCCGACAGUGCUGGAuuguacuacuguuguucUAACACUGUCUGGUAACGAUGUuuucugggugac
.(((((((..(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..)))))))....

Structure

---u       uc    -     C       C    uugu  u 
    cucagga  CAUC UUACC GACAGUG UGGA    ac a
    |||||||  |||| ||||| ||||||| ||||    ||  
    gggucuu  GUAG AAUGG CUGUCAC AUcu    ug c
cagu       uU    C     U       A    -ugu  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 3944734-3944816 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-200a

Mature fru-miR-200a-5p

• Accession: MIMAT0052859
• Description: Fugu rubripes fru-miR-200a-5p mature miRNA
• Sequence: 11 - CAUCUUACCCGACAGUGCUGGA - 32
• Evidence: not_experimental

Mature fru-miR-200a-3p

• Accession: MIMAT0002981
• Description: Fugu rubripes fru-miR-200a-3p mature miRNA
• Sequence: 50 - UAACACUGUCUGGUAACGAUGU - 71
• Evidence: not_experimental

References