Stem-loop cfa-mir-200b

Accession

MI0010361

Description

Canis familiaris cfa-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

gccaucgcCAUCUUACUGGGCAGCAUUGGAuggugucaggucucuaauacugccugguaaugaugacggcggggcccugc
(((.(((((((((((((((((((.((((((.(.(....).).)))))).))))))))))).)))...)))))))).....

Structure

-----   a     ---   -           C      u g g 
     gcc ucgcC   AUC UUACUGGGCAG AUUGGA g u u
     ||| |||||   ||| ||||||||||| |||||| | |  
     cgg ggcgg   uag aaugguccguc uaaucu u g c
cgucc   -     cag   u           a      c g a 

Annotation confidence Not enough data

Genome context

chr5: 56368400-56368479 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-200b

Mature cfa-miR-200b

• Accession: MIMAT0009864
• Description: Canis familiaris cfa-miR-200b mature miRNA
• Sequence: 9 - CAUCUUACUGGGCAGCAUUGGA - 30
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39