Stem-loop cfa-mir-200b

Accession

MI0010361

Description

Canis lupus familiaris cfa-mir-200b precursor miRNA

Literature search

12 open access papers mention cfa-mir-200b
(13 sentences)

Sequence

906851 reads, 2096.0 reads per million, 72 experiments

gccaucgcCAUCUUACUGGGCAGCAUUGGAuggugucaggucucUAAUACUGCCUGGUAAUGAUGACggcggggcccugc
(((.(((((((((((((((((((.((((((.(.(....).).)))))).))))))))))).)))...)))))))).....

Structure

-----   a     ---   -           C      u g g 
     gcc ucgcC   AUC UUACUGGGCAG AUUGGA g u u
     ||| |||||   ||| ||||||||||| |||||| | |  
     cgg ggcgg   UAG AAUGGUCCGUC UAAUcu u g c
cgucc   -     CAG   U           A      c g a 

Annotation confidence Medium

Genome context

5: 56571297-56571376 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-200b

Mature cfa-miR-200b-5p

• Accession: MIMAT0009864
• Description: Canis lupus familiaris cfa-miR-200b-5p mature miRNA
• Sequence: 9 - CAUCUUACUGGGCAGCAUUGGA - 30
• Evidence: not_experimental

Mature cfa-miR-200b-3p

• Accession: MIMAT0051910
• Description: Canis lupus familiaris cfa-miR-200b-3p mature miRNA
• Sequence: 45 - UAAUACUGCCUGGUAAUGAUGAC - 67
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39