Stem-loop ccr-mir-200a

Accession

MI0023361

Description

Cyprinus carpio ccr-mir-200a precursor miRNA

Literature search

1 open access papers mention ccr-mir-200a
(4 sentences)

Sequence

563019 reads, 3562.0 reads per million, 33 experiments

cuggcacuuagcaguCAUCUUACCGGACAGUGCUGGAcuguguaucuguuuucUAACACUGUCUGGUAACGAUGuuuguugggugaccu
..((((((((((((.(((((((((((((((((.((((..............)))).))))))))))))).)))).)))))))))).)).

Structure

cu  -          u    -             C    cugugu 
  gg cacuuagcag CAUC UUACCGGACAGUG UGGA      a
  || |||||||||| |||| ||||||||||||| ||||       
  cc guggguuguu GUAG AAUGGUCUGUCAC AUcu      u
-u  a          u    C             A    uuuguc 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-200a-5p

• Accession: MIMAT0058302
• Description: Cyprinus carpio ccr-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACCGGACAGUGCUGGA - 37
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-200a-3p

• Accession: MIMAT0026258
• Description: Cyprinus carpio ccr-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925