Stem-loop tch-mir-200b

Accession

MI0031282

Description

Tupaia chinensis tch-mir-200b precursor miRNA

Sequence

702753 reads, 2131.0 reads per million, 30 experiments

CAUCUUACUGGGCAGCAUUGGAUGGugucuggucucUAAUACUGCCUGGUAAUGAUGA
(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).

Structure

-    -           C      U  ug 
 CAUC UUACUGGGCAG AUUGGA GG  u
 |||| ||||||||||| |||||| ||  c
 GUAG AAUGGUCCGUC UAAUcu cu  u
A    U           A      -  gg 

Annotation confidence High

Genome context

KB364377.1: 9043059-9043116 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-200b

Mature tch-miR-200b-5p

• Accession: MIMAT0059130
• Description: Tupaia chinensis tch-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACUGGGCAGCAUUGGAUGG - 25
• Evidence: experimental ; Illumina [1]

Mature tch-miR-200b-3p

• Accession: MIMAT0036612
• Description: Tupaia chinensis tch-miR-200b-3p mature miRNA
• Sequence: 37 - UAAUACUGCCUGGUAAUGAUGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254