miRBase entry: ptr-mir-200c

Stem-loop ptr-mir-200c

Accession

MI0020598

Description

Pan troglodytes ptr-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

acccaaggugggcgggcugggcgggggcccucgucuuacccagcaguguuugggugcgguugggagucucUAAUACUGCCGGGUAAUGAUGGAggccccugucccugug
.((((...))))((((...((((((((((.(((((((((((.((((((((.(((.((........))))).)))))))).)))))).))))).))))))))))))))..

Structure

acccaagguggg    cug          c     -      a        u   u  ggu 
            cggg   ggcgggggcc ucguc uuaccc gcaguguu ggg gc   u
            ||||   |||||||||| ||||| |||||| |||||||| ||| ||    
            gucc   cuguccccgg GGUAG AAUGGG CGUCAUAA cuc ug   g
----------gu    ---          A     U      C        U   -  agg

Annotation confidence Not enough data

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Genome context

chr12: 7286057-7286165 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ptr-miR-200c

Accession	MIMAT0024051
Description	Pan troglodytes ptr-miR-200c mature miRNA
Sequence	71 - UAAUACUGCCGGGUAAUGAUGGA - 93
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116