Stem-loop dre-mir-429b

Accession

MI0010836

Description

Danio rerio dre-mir-429b precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

12 open access papers mention dre-mir-429b
(45 sentences)

Sequence

187655 reads, 424.0 reads per million, 276 experiments

ucuauacugcaguaaaauccucugauuuguGUCUUACCAGGCAAGUUUAGAuguugauacugugucUAAUACUGCCUGGUAAUGCCAUcaaucacugggaauuugaucgc
............((((.((((.(((((.(((.(((((((((((.((((((((((....))...)))))).)))))))))))).).))).)))))..)))).)))).....

Structure

ucuauacugcag    a    -c     u   U -          A  -      ---  u 
            uaaa uccu  ugauu guG C UUACCAGGCA GU UUAGAu   gu g
            |||| ||||  ||||| ||| | |||||||||| || ||||||   ||  
            guuu aggg  acuaa UAC G AAUGGUCCGU CA AAUcug   ca a
-------cgcua    a    uc     c   C U          -  U      ugu  u 

Annotation confidence High

Genome context

chr6: 40653129-40653238 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-429b

Mature dre-miR-429b-5p

• Accession: MIMAT0052798
• Description: Danio rerio dre-miR-429b-5p mature miRNA
• Sequence: 31 - GUCUUACCAGGCAAGUUUAGA - 51
• Evidence: experimental ; 454 [1]

Mature dre-miR-429b-3p

• Accession: MIMAT0011291
• Description: Danio rerio dre-miR-429b-3p mature miRNA
• Sequence: 67 - UAAUACUGCCUGGUAAUGCCAU - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195