miRBase entry: 19397817

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

PubMed ID 19397817
Authors Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
Journal BMC Genomics
Volume 10
Pages 195

There are 173 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
dre-mir-2184 MI0010834 1636 chr10 35654245 35654354 - High
dre-mir-2185-1 MI0010835 44 chr17 39771488 39771585 + -
dre-mir-429b MI0010836 59 chr6 40653129 40653238 - -
dre-mir-1388 MI0010837 625 chr23 13604218 13604320 + High
dre-mir-1788 MI0010838 16 chr9 11551604 11551704 - -
dre-mir-2187 MI0010839 12 chr17 19900754 19900857 - -
dre-mir-196c MI0010840 111 chr11 2190621 2190730 + -
dre-mir-2191 MI0010842 1 chr23 36790223 36790332 + -
dre-mir-107b MI0010843 92 chr17 23573130 23573215 + -
dre-mir-455-2 MI0010844 253 chr16 51776536 51776640 + High
dre-mir-222b MI0010845 182 chr21 44568170 44568266 - High
dre-mir-2196 MI0010846 None chr12 31916943 31917052 + -
dre-mir-2198 MI0010847 None chr2 36753649 36753758 + -
dre-mir-126b MI0010848 663 chr21 7240227 7240329 - High
dre-mir-2186 MI0010849 0 chr12 5696989 5697098 + -
dre-mir-2188 MI0010850 437 chr5 69021859 69021962 - High
dre-mir-2189 MI0010851 218 KN150127.1 17150 17259 + -
dre-mir-2192 MI0010852 2 chr12 17706792 17706901 - -
dre-mir-196d MI0010853 32 chr16 20913413 20913484 + High
dre-mir-2193 MI0010854 5 chr20 48963298 48963407 - -
dre-mir-2194 MI0010855 None chr22 17070090 17070199 - -
dre-mir-2195 MI0010856 None chr3 45635077 45635186 + -
dre-mir-2197 MI0010857 None chr1 39373802 39373911 - -
dre-mir-2185-2 MI0019584 44 chr17 39778647 39778744 + -
dre-mir-2185-3 MI0019585 44 chr17 39785815 39785912 + -
dre-mir-2190-2 MI0019586 4216 None None -
dre-mir-2190-3 MI0019587 4216 None None -
dre-mir-2190-4 MI0019588 4216 None None -
dre-mir-196a-1 MI0001372 441 chr23 36088091 36088196 + High
dre-mir-199-1 MI0001373 5531 chr20 14875460 14875546 + High
dre-mir-199-2 MI0001374 5528 chr5 1376773 1376868 - -
dre-mir-199-3 MI0001375 2482 chr3 47195137 47195234 - High
dre-mir-203a MI0001376 5116 chr17 45808153 45808248 + High
dre-mir-210 MI0001379 142 chr25 25506483 25506555 - High
dre-mir-214 MI0001381 368 chr20 14877639 14877738 + High
dre-mir-219-1 MI0001384 45 chr10 10329464 10329554 - High
dre-mir-219-2 MI0001385 96 chr5 65101371 65101450 + -
dre-mir-221 MI0001387 1739 chr9 33920932 33921024 - High
dre-mir-222a MI0001388 5132 chr9 33921464 33921571 - High
dre-mir-430a-1 MI0001527 77906 chr10 4493277 4493358 + -
dre-mir-430b-1 MI0001528 244455 chr4 28695960 28696040 + High
dre-mir-430c-1 MI0001529 117821 chr4 28693371 28693443 + High
dre-mir-429a MI0001720 1468 chr23 24073815 24073896 + -
dre-let-7a-1 MI0001857 13812 chr11 27503232 27503320 - High
dre-let-7a-2 MI0001858 13783 chr15 21437876 21437959 + -
dre-let-7a-3 MI0001860 13908 chr4 18654155 18654261 - High
dre-let-7a-4 MI0001861 13778 chr5 29990452 29990544 + -
dre-let-7a-5 MI0001862 13947 chr23 5431196 5431319 - High
dre-let-7a-6 MI0001863 13902 chr6 54506458 54506586 - High
dre-let-7b MI0001865 1886 chr4 18653148 18653241 - High
dre-let-7c-1 MI0001866 912 chr15 29795823 29795929 + High
dre-let-7c-2 MI0001867 903 chr10 38072077 38072168 - High
dre-let-7d-1 MI0001868 484 chr16 24881122 24881218 + High
dre-let-7d-2 MI0001870 485 chr19 9429857 9429944 + High
dre-let-7e MI0001871 2136 chr23 5431418 5431517 - -
dre-let-7f MI0001872 1337 chr11 27503017 27503132 - -
dre-let-7g-1 MI0001873 726 chr23 18382456 18382551 - -
dre-let-7g-2 MI0001874 725 chr23 28536361 28536457 + -
dre-let-7h MI0001875 446 chr23 28536665 28536778 + -
dre-let-7i MI0001876 227 chr25 1629655 1629749 - -
dre-mir-1-2 MI0001877 3697 chr2 4116314 4116400 - -
dre-mir-1-1 MI0001878 3659 chr23 7210157 7210262 - -
dre-mir-9-1 MI0001880 2172 chr16 29216274 29216360 + High
dre-mir-9-2 MI0001881 2174 chr10 43535960 43536095 - High
dre-mir-9-4 MI0001882 1225 chr22 18254769 18254855 + High
dre-mir-9-3 MI0001883 2148 chr25 8551240 8551340 - High
dre-mir-9-5 MI0001884 2173 chr5 48170098 48170184 - High
dre-mir-9-6 MI0001885 2151 chr7 14379544 14379631 - High
dre-mir-9-7 MI0001886 1156 chr2 59102169 59102252 - High
dre-mir-21-1 MI0001908 155834 chr10 28198894 28199041 - High
dre-mir-21-2 MI0001909 153903 chr15 17373789 17373915 + -
dre-mir-25 MI0001922 1153 chr14 100767 100848 + High
dre-mir-30e-2 MI0001950 2501 chr13 27795130 27795209 + High
dre-mir-101a MI0001960 709 chr6 31365446 31365526 + High
dre-mir-103 MI0001962 646 chr13 15223296 15223383 + -
dre-mir-107a MI0001963 334 chr12 16960693 16960781 + High
dre-mir-122 MI0001965 145 chr21 10881423 10881498 - -
dre-mir-124-1 MI0001966 281 chr2 26645317 26645398 - -
dre-mir-124-2 MI0001967 504 chr20 38905531 38905613 - High
dre-mir-124-3 MI0001968 504 chr24 24455632 24455748 + High
dre-mir-124-4 MI0001969 291 chr17 27402261 27402343 + High
dre-mir-124-5 MI0001970 504 chr23 17783413 17783541 + High
dre-mir-124-6 MI0001971 307 chr8 23122762 23122874 - High
dre-mir-126a MI0001979 817 chr8 11548419 11548519 - High
dre-mir-129-2 MI0001982 28 chr7 50287933 50288019 - High
dre-mir-129-1 MI0001983 59 chr4 19047466 19047555 - High
dre-mir-130b MI0001986 936 chr5 13299331 13299414 + High
dre-mir-130c-1 MI0001987 1226 chr10 17453363 17453503 + High
dre-mir-130c-2 MI0001988 1222 chr5 13288828 13288908 + High
dre-mir-133a-2 MI0001992 525 chr23 7172120 7172203 - -
dre-mir-133a-1 MI0001993 526 chr2 4114118 4114216 - -
dre-mir-133b MI0001994 377 chr20 19543379 19543462 - High
dre-mir-133c MI0001995 555 chr17 5962975 5963065 - High
dre-mir-135c-1 MI0001996 36 chr11 38175071 38175150 - -
dre-mir-135c-2 MI0001997 33 chr23 18063173 18063299 - -
dre-mir-140 MI0002003 316 chr25 34791362 34791466 + High
dre-mir-142a MI0002005 759 chr5 3170736 3170826 + High
dre-mir-142b MI0002006 259 chr15 15383898 15383983 - High
dre-mir-150 MI0002016 61 chr3 32571309 32571387 + -
dre-mir-152 MI0002017 264 chr3 24095957 24096036 + High
dre-mir-462 MI0002028 33562 chr8 26082308 26082409 + -
dre-mir-196a-2 MI0002035 409 chr19 19747619 19747694 + High
dre-mir-196b MI0002036 192 chr3 23673377 23673455 + High
dre-mir-202 MI0002040 32 chr13 50602639 50602714 + High
dre-mir-203b MI0002041 11673 chr20 27405878 27405962 + High
dre-mir-219-3 MI0002054 460 chr19 18861739 18861888 - High
dre-mir-365-1 MI0002068 97 chr3 43716827 43716915 + -
dre-mir-365-2 MI0002069 103 chr3 35960989 35961086 + High
dre-mir-365-3 MI0002070 102 chr6 18516311 18516409 - High
dre-mir-455-1 MI0002077 398 chr5 65250379 65250474 - High
dre-mir-430c-2 MI0002079 117821 chr4 28693975 28694047 + High
dre-mir-430c-3 MI0002080 117821 chr4 28695113 28695185 + High
dre-mir-430c-4 MI0002081 117821 chr4 28695717 28695789 + High
dre-mir-430c-5 MI0002082 117821 chr4 28696854 28696926 + High
dre-mir-430c-6 MI0002083 117821 chr4 28697458 28697530 + High
dre-mir-430c-7 MI0002087 117821 chr4 28699198 28699270 + High
dre-mir-430c-8 MI0002088 117821 chr4 28699824 28699896 + High
dre-mir-430c-9 MI0002089 117821 chr4 28700961 28701033 + High
dre-mir-430c-10 MI0002090 117821 chr4 28701587 28701659 + High
dre-mir-430c-11 MI0002091 117821 chr4 28702213 28702285 + High
dre-mir-430c-12 MI0002092 117821 chr4 28703350 28703422 + High
dre-mir-430c-13 MI0002093 117821 chr4 28705090 28705162 + High
dre-mir-430c-14 MI0002094 117821 chr4 28705716 28705788 + High
dre-mir-430c-15 MI0002095 117821 chr4 28706853 28706925 + High
dre-mir-430c-16 MI0002096 117821 chr4 28707457 28707529 + High
dre-mir-430c-17 MI0002097 117821 chr4 28708593 28708665 + High
dre-mir-430c-18 MI0002098 117821 chr4 28709197 28709269 + High
dre-mir-430a-2 MI0002111 78591 chr4 28694950 28695031 + High
dre-mir-430a-3 MI0002112 78591 chr4 28696691 28696772 + High
dre-mir-430a-4 MI0002113 78938 chr4 28693834 28693915 + High
dre-mir-430a-5 MI0002114 78591 chr4 28699035 28699116 + High
dre-mir-430a-6 MI0002115 78591 chr4 28700798 28700879 + High
dre-mir-430a-7 MI0002116 78591 chr4 28703187 28703268 + High
dre-mir-430a-8 MI0002117 78591 chr4 28704927 28705008 + High
dre-mir-430a-9 MI0002118 78591 chr4 28706690 28706771 + High
dre-mir-430a-10 MI0002119 78591 chr4 28708430 28708511 + High
dre-mir-430a-11 MI0002120 78893 chr4 28701424 28701505 + High
dre-mir-430a-12 MI0002121 78938 chr4 28695576 28695657 + High
dre-mir-430a-13 MI0002122 78938 chr4 28697317 28697398 + High
dre-mir-430a-14 MI0002123 78938 chr4 28707316 28707397 + High
dre-mir-430a-15 MI0002124 78938 chr4 28709056 28709137 + High
dre-mir-430a-16 MI0002125 78937 chr4 28697921 28698002 + High
dre-mir-430a-17 MI0002126 78937 chr4 28703813 28703894 + High
dre-mir-430a-18 MI0002131 77902 chr4 28693199 28693288 + -
dre-mir-430i-1 MI0002139 1055 chr4 28699661 28699742 + High
dre-mir-430i-2 MI0002140 1055 chr4 28702050 28702131 + High
dre-mir-430i-3 MI0002141 1055 chr4 28705553 28705634 + High
dre-mir-430b-2 MI0002142 244455 chr4 28700067 28700147 + High
dre-mir-430b-3 MI0002143 244455 chr4 28707700 28707780 + High
dre-mir-430b-4 MI0002144 244367 chr4 28693628 28693708 + High
dre-mir-430b-6 MI0002146 244465 chr4 28697111 28697191 + High
dre-mir-430b-7 MI0002147 244465 chr4 28701218 28701298 + High
dre-mir-430b-8 MI0002148 244465 chr4 28708850 28708930 + High
dre-mir-430b-9 MI0002149 244420 chr4 28698305 28698385 + High
dre-mir-430b-10 MI0002150 244455 chr4 28695370 28695450 + High
dre-mir-430b-11 MI0002151 244455 chr4 28697715 28697795 + High
dre-mir-430b-12 MI0002152 244455 chr4 28699455 28699535 + High
dre-mir-430b-13 MI0002153 244455 chr4 28701844 28701924 + High
dre-mir-430b-14 MI0002154 244455 chr4 28703607 28703687 + High
dre-mir-430b-15 MI0002155 244455 chr4 28705347 28705427 + High
dre-mir-430b-16 MI0002156 244455 chr4 28707110 28707190 + High
dre-mir-430b-17 MI0002157 244455 chr4 28709454 28709534 + High
dre-mir-430b-18 MI0002158 244441 chr4 28702456 28702536 + High
dre-mir-430b-5 MI0002166 244455 chr4 28694219 28694299 + High
dre-mir-430b-19 MI0002170 244441 chr4 28705959 28706039 + High
dre-mir-430b-20 MI0002171 244420 chr4 28704197 28704277 + High
dre-let-7j MI0003343 522 chr6 41454791 41454873 + High
dre-mir-135b MI0003364 121 chr8 26005588 26005669 + High
dre-mir-135a MI0003692 14 chr25 31044110 31044207 - -
dre-mir-499 MI0004766 230 chr11 25205153 25205243 - High
dre-mir-738 MI0004784 210189 chr4 68564061 68564158 - -
dre-mir-129-3 MI0039507 59 chr18 10670657 10670746 + High
dre-mir-129-4 MI0039508 28 chr25 30176471 30176559 + High



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