Stem-loop dre-mir-222a

Accession

MI0001388

Description

Danio rerio dre-mir-222a precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

9 open access papers mention dre-mir-222a
(66 sentences)

Sequence

6269856 reads, 5887.0 reads per million, 299 experiments

gccgguggcuuguucgggugcucaugagaUGCUCAGUAGUCAGUGUAGAUCCUGugucacaaucagcAGCUACAUCUGGCUACUGGGUCUCUGauggcauuuucugcu
.((((........))))((((.(((.(((.((((((((((((((((((...(((.........)))...))))).))))))))))))).))).)))))))........

Structure

gccgguggcuuguucgg    u   g   U             -     AUC   ugu 
                 gugc cau aga GCUCAGUAGUCAG UGUAG   CUG   c
                 |||| ||| ||| ||||||||||||| |||||   |||   a
                 uacg gua UCU UGGGUCAUCGGUC ACAUC   gac   c
---------ucgucuuu    -   G   C             U     GAc   uaa 

Annotation confidence High

Genome context

chr9: 33921464-33921571 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-222a

Mature dre-miR-222a-5p

• Accession: MIMAT0031927
• Description: Danio rerio dre-miR-222a-5p mature miRNA
• Sequence: 30 - UGCUCAGUAGUCAGUGUAGAUCCUG - 54
• Evidence: not_experimental

Mature dre-miR-222a-3p

• Accession: MIMAT0001289
• Description: Danio rerio dre-miR-222a-3p mature miRNA
• Sequence: 68 - AGCUACAUCUGGCUACUGGGUCUCUG - 93
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293