Stem-loop dre-mir-462

Accession

MI0002028

Description

Danio rerio dre-mir-462 precursor miRNA mir-462

Gene
family

RF03683; mir-462

Literature search

7 open access papers mention dre-mir-462
(21 sentences)

Sequence

2786114 reads, 4334.0 reads per million, 292 experiments

gucuggauggUAACGGAACCCAUAAUGCAGCUGuuugguugauugauugacaGCUGUCUGUGGAUUCCGUGCCCcuccuuucuugcaggagcucauugagau
((((.(((((..((((((.(((((..(((((((((..(((....))).))))))))).))))).))))))((.(((.(......).))).))))))).))))

Structure

    g     --------------------UA      C     AU         ug   g 
gucu gaugg                      ACGGAA CCAUA  GCAGCUGuu  guu a
|||| |||||                      |||||| |||||  |||||||||  |||  
uaga uuacu                      UGCCUU GGUGU  UGUCGacag  uag u
    g     cgaggacguucuuuccucCCCG      A     -C         -u   u 

Annotation confidence High

Genome context

chr8: 26082308-26082409 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-462

Mature dre-miR-462-5p

• Accession: MIMAT0001855
• Description: Danio rerio dre-miR-462-5p mature miRNA
• Sequence: 11 - UAACGGAACCCAUAAUGCAGCUG - 33
• Evidence: experimental ; cloned [1]

Mature dre-miR-462-3p

• Accession: MIMAT0052770
• Description: Danio rerio dre-miR-462-3p mature miRNA
• Sequence: 53 - GCUGUCUGUGGAUUCCGUGCCC - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293