Stem-loop dre-mir-107b

Accession

MI0010843

Description

Danio rerio dre-mir-107b precursor miRNA mir-103

Gene
family

RF00129; mir-103

Literature search

5 open access papers mention dre-mir-107b
(12 sentences)

Sequence

670339 reads, 806.0 reads per million, 280 experiments

ucuggccacucugGGCUUCUCUACAGUGUUGCCUUGuagccuggugaucaAGCAGCAUUGUACAGGGCUUUcagcguguacagaac
((((..(((.(((((((.((.(((((((((((.(((..((...))...)))))))))))))).))))))..))).)))..))))..

Structure

--    gc   u   --    U  C           C   -ua  c 
  ucug  cac cug  GGCU CU UACAGUGUUGC UUG   gc  
  ||||  ||| |||  |||| || ||||||||||| |||   || u
  agac  gug gac  UCGG GA AUGUUACGACG Aac   ug  
ca    au   c   UU    -  C           -   uag  g 

Annotation confidence High

Genome context

chr17: 23573130-23573215 [+]

Mature dre-miR-107b-5p

• Accession: MIMAT0052801
• Description: Danio rerio dre-miR-107b-5p mature miRNA
• Sequence: 14 - GGCUUCUCUACAGUGUUGCCUUG - 36
• Evidence: experimental ; 454 [1]

Mature dre-miR-107b-3p

• Accession: MIMAT0011301
• Description: Danio rerio dre-miR-107b-3p mature miRNA
• Sequence: 51 - AGCAGCAUUGUACAGGGCUUU - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195