Search results

mir-103 family in Rfam (RF00129)

Summary
This family consists of the mammalian microRNA (miRNA) precursors mir-103 and mir107. Animal miRNAs are transcribed as ~70nt precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA.
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5'

There are 94 hairpins in the mir-103 family

Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-103a-2 MI0000108 15897 chr20 3917494 3917571 + High
hsa-mir-103a-1 MI0000109 15862 chr5 168560896 168560973 - High
hsa-mir-107 MI0000114 14654 chr10 89592747 89592827 - High
mmu-mir-103-1 MI0000587 16701 chr11 35782396 35782481 + High
mmu-mir-103-2 MI0000588 16710 chr2 131288052 131288137 + High
mmu-mir-107 MI0000684 15027 chr19 34820687 34820773 - High
rno-mir-103-2 MI0000887 1247 chr3 123833671 123833756 + High
rno-mir-103-1 MI0000888 1240 chr10 20606715 20606800 + High
rno-mir-107 MI0000890 432 chr1 253128250 253128336 - High
gga-mir-103-2 MI0001213 6009 chr4 89095068 89095150 - High
gga-mir-107 MI0001215 111 chr6 19401516 19401596 - -
gga-mir-103-1 MI0001236 6009 chr13 4689830 4689907 + -
dre-mir-103 MI0001962 646 chr13 15223296 15223383 + -
dre-mir-107a MI0001963 334 chr12 16960693 16960781 + High
ssc-mir-103-1 MI0002448 652 chr16 59912617 59912698 + -
ssc-mir-107 MI0002449 81 chr14 110407095 110407181 - -
age-mir-103 MI0002738 - None None -
ggo-mir-103 MI0002739 - chr5 152587181 152587258 - -
ppa-mir-103 MI0002740 - chr5 170690677 170690754 - -
ppy-mir-103-1 MI0002741 - chr5 171203069 171203146 - -
ptr-mir-103-1 MI0002742 - chr5 169084206 169084283 - -
mml-mir-103-1 MI0002743 5835 chr6 166809198 166809275 - High
lla-mir-103 MI0002744 - None None -
mne-mir-103 MI0002745 - None None -
mml-mir-107 MI0002754 94 chr9 84746619 84746699 - High
ptr-mir-107 MI0002755 - chr10 90829406 90829486 - -
ggo-mir-107 MI0002756 - chr10 103954612 103954692 - -
ppy-mir-107 MI0002757 - chr10 88300227 88300307 - -
lla-mir-107 MI0002758 - None None -
mne-mir-107 MI0002759 - None None -
ppa-mir-107 MI0002760 - chr10 89857653 89857733 - -
fru-mir-103 MI0003377 - HE602548.1 9530646 9530727 - -
tni-mir-103 MI0003378 - 1 5372728 5372813 - -
fru-mir-107 MI0003379 - HE602536.1 11331215 11331290 + -
tni-mir-107 MI0003380 - 17 10614411 10614499 + -
bta-mir-103-1 MI0004736 1346 chr20 189696 189767 - -
xtr-mir-107 MI0004823 - chr7 28096644 28096716 - -
xtr-mir-103-1 MI0004904 - chr3 24141492 24141576 + -
xtr-mir-103-2 MI0004929 - chr1 6083393 6083475 + -
bta-mir-107 MI0005006 756 chr26 11348565 11348645 - High
mdo-mir-103-1 MI0005284 3052 chr1 367063025 367063100 - High
mdo-mir-103-2 MI0005285 3056 chr1 727148312 727148395 - High
mdo-mir-107 MI0005286 74 chr1 81981106 81981189 + -
bta-mir-103-2 MI0005456 1352 chr13 51962355 51962430 - -
oan-mir-103-2 MI0006748 6663 Contig19877 3174 3278 + High
oan-mir-107 MI0006857 97 Ultra12 966231 966319 - High
oan-mir-103-1 MI0006930 6638 X1 17065005 17065128 + High
hsa-mir-103b-1 MI0007261 0 chr5 168560904 168560965 + -
hsa-mir-103b-2 MI0007262 0 chr20 3917502 3917563 - -
mml-mir-103-2 MI0007611 5837 chr10 36786820 36786897 + High
cfa-mir-107 MI0008072 - chr28 4484653 4484710 - -
cfa-mir-103-1 MI0008098 - chr4 43182876 43182937 + -
ptr-mir-103-2 MI0008409 - chr20 3789622 3789698 + -
cfa-mir-103-2 MI0010357 - chr24 17468354 17468430 - -
dre-mir-107b MI0010843 92 chr17 23573130 23573215 + -
eca-mir-107b MI0012643 301 chr1 38749365 38749445 + -
eca-mir-107a MI0012805 682 chr14 12370468 12370539 + -
eca-mir-103 MI0012854 717 chr22 19043286 19043363 - -
ssc-mir-103-2 MI0013105 686 chr17 36149787 36149866 - -
tgu-mir-103-1 MI0013731 - chr13 14805606 14805718 - -
tgu-mir-103-2 MI0013732 - chr4 68894825 68894897 - -
tgu-mir-103-3 MI0013733 - chrUn 37745864 37745976 + -
tgu-mir-107 MI0013773 - chr6 18493361 18493433 - -
ppy-mir-103-2 MI0014813 - chr20 24380544 24380621 - -
pma-mir-103a MI0017055 - GL480747.1 5387 5469 + -
pma-mir-103b MI0017056 - GL476774.1 7874 7950 - -
aca-mir-107 MI0018714 - GL343219.1 2863 2953 - -
aca-mir-103 MI0018715 - chr2 189292145 189292241 + -
ola-mir-103-1 MI0019475 - 10 2552790 2552891 + -
ola-mir-107 MI0019512 - 15 14626163 14626269 + -
ola-mir-103-2 MI0019544 - 22 25839317 25839417 - -
cgr-mir-103 MI0020378 8684 JH000136.1 1241800 1241878 - Low
cgr-mir-107 MI0020380 179 JH000132.1 205737 205816 - -
ccr-mir-103 MI0023306 - None None -
ccr-mir-107 MI0023307 - None None -
ipu-mir-103-1 MI0024460 - None None -
ipu-mir-103-2 MI0024461 - None None -
ipu-mir-107a MI0024462 - None None -
ipu-mir-107b MI0024463 - None None -
oar-mir-103 MI0025248 20902 chr16 335467 335538 - High
oar-mir-107 MI0025250 8908 chr22 10962238 10962318 - High
ssa-mir-103 MI0026437 - None None -
ssa-mir-107 MI0026441 - None None -
efu-mir-107 MI0028639 - JH977763.1 2838003 2838086 + -
efu-mir-103a MI0028696 - JH977653.1 4373468 4373551 + -
efu-mir-103b MI0028775 - JH977624.1 4661201 4661284 + -
chi-mir-103 MI0030590 - chr13 51964308 51964393 - -
chi-mir-107 MI0030595 - chr26 11322796 11322882 - -
tch-mir-103a-1 MI0031139 - KB320659.1 3222083 3222144 + -
tch-mir-103a-2 MI0031157 - KB364366.1 2133703 2133762 + -
tch-mir-107 MI0031166 - KB320639.1 1831420 1831477 - -
oha-mir-107 MI0031316 - AZIM01001029.1 157003 157081 + -
oha-mir-103a MI0031317 - AZIM01003360.1 7261 7329 + -
oha-mir-103b MI0031318 - AZIM01062068.1 339 422 - -



Comments or questions? Email mirbase@manchester.ac.uk