Stem-loop tgu-mir-107

Accession

MI0013773

Description

Taeniopygia guttata tgu-mir-107 precursor miRNA

Gene family

MIPF0000024; mir-103

Sequence

uucagcuucuuuacaguguugccuuguggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcauggag
...((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))..............

Structure

-----------uuc    u  u           c   u   a 
              agcu cu uacaguguugc uug ggc u
              |||| || ||||||||||| ||| ||| g
              UCGG GA AUGUUACGACG Aac uug g
gagguacgaaACUA    -  C           -   -   a 

Annotation confidence Not enough data

Genome context

chr6: 18493361-18493433 [-]

Mature tgu-miR-107

• Accession: MIMAT0014556
• Description: Taeniopygia guttata tgu-miR-107 mature miRNA
• Sequence: 41 - AGCAGCAUUGUACAGGGCUAUCA - 63
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727