miRBase entry: dre-mir-103

Stem-loop dre-mir-103


Accession
MI0001962
Description
Danio rerio dre-mir-103 precursor miRNA mir-103
Gene
family?
RF00129; mir-103

Literature search
3 open access papers mention dre-mir-103
(7 sentences)

Sequence

16381 reads, 646 reads per million, 11 experiments
uugcccuggucugucagccucuuuacggugcugccuuguggaaucuggaucaAGCAGCAUUGUACAGGGCUAUGAgagacccgggccc
..((((.(((((.((((((.((.(((((((((((.(((............)))))))))))))).)))))..))).))))).))))..

Structure
uu    u     g   --   u  u           c   uggaa 
  gccc ggucu uca  gcc cu uacggugcugc uug     u
  |||| ||||| |||  ||| || ||||||||||| |||      
  cggg ccaga AGU  CGG GA AUGUUACGACG Aac     c
cc    c     g   AU   -  C           -   uaggu 


Annotation confidence Not enough data
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Genome context
chr13: 15223296-15223383 [+]

Database links

Mature dre-miR-103

Accession MIMAT0001816
Description Danio rerio dre-miR-103 mature miRNA
Sequence 53 - AGCAGCAUUGUACAGGGCUAUGA - 75
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293