Stem-loop dre-mir-103

Accession

MI0001962

Description

Danio rerio dre-mir-103 precursor miRNA mir-103

Gene
family

RF00129; mir-103

Literature search

26 open access papers mention dre-mir-103
(44 sentences)

Sequence

2308709 reads, 3148.0 reads per million, 280 experiments

uugcccuggucugucAGCCUCUUUACGGUGCUGCCUUGuggaaucuggaucaAGCAGCAUUGUACAGGGCUAUGAgagacccgggccc
..((((.(((((.((((((.((.(((((((((((.(((............)))))))))))))).)))))..))).))))).))))..

Structure

uu    u     g   --   U  U           C   uggaa 
  gccc ggucu ucA  GCC CU UACGGUGCUGC UUG     u
  |||| ||||| |||  ||| || ||||||||||| |||      
  cggg ccaga AGU  CGG GA AUGUUACGACG Aac     c
cc    c     g   AU   -  C           -   uaggu 

Annotation confidence High

Genome context

chr13: 15223296-15223383 [+]

Mature dre-miR-103-5p

• Accession: MIMAT0052760
• Description: Danio rerio dre-miR-103-5p mature miRNA
• Sequence: 16 - AGCCUCUUUACGGUGCUGCCUUG - 38
• Evidence: not_experimental

Mature dre-miR-103-3p

• Accession: MIMAT0001816
• Description: Danio rerio dre-miR-103-3p mature miRNA
• Sequence: 53 - AGCAGCAUUGUACAGGGCUAUGA - 75
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293