Stem-loop mml-mir-103-1

Accession

MI0002743

Description

Macaca mulatta mml-mir-103-1 precursor miRNA mir-103

Gene
family

RF00129; mir-103

Literature search

5 open access papers mention mml-mir-103-1
(18 sentences)

Sequence

831683 reads, 6148 reads per million, 8 experiments

uacugcccUCGGCUUCUUUACAGUGCUGCCUUGuugcauauggaucaAGCAGCAUUGUACAGGGCUAUGAaggcauug
...((((.((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)).))))...

Structure

uac    c  --    U  U           C   u g a 
   ugcc UC  GGCU CU UACAGUGCUGC UUG u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [2]. The expression of this mature miRNA was validated by Miska et al [1].

Genome context

chr6: 166809198-166809275 [-]

Mature mml-miR-103-3p

• Accession: MIMAT0002447
• Description: Macaca mulatta mml-miR-103-3p mature miRNA
• Sequence: 48 - AGCAGCAUUGUACAGGGCUAUGA - 70
• Evidence: not_experimental

Mature mml-miR-103-5p

• Accession: MIMAT0026582
• Description: Macaca mulatta mml-miR-103-5p mature miRNA
• Sequence: 9 - UCGGCUUCUUUACAGUGCUGCCUUG - 33
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


2. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45