Stem-loop ola-mir-107

Accession

MI0019512

Description

Oryzias latipes ola-mir-107 precursor miRNA

Literature search

3 open access papers mention ola-mir-107
(3 sentences)

Sequence

22346 reads, 237.0 reads per million, 49 experiments

aaaucucacaucugugugcugugAGCUUCUUUACAGUGUUGCCUUGuggcauggcgaucaAGCAGCAUUGUACAGGGCUAUcacugcaugcagaacugcagcugguu
....((((..(((((((((.(((((((.((.(((((((((((.((((.((...)).).)))))))))))))).)))))..)))).)))))))))..)).))......

Structure

--aaau  -  ca         u    --   U  U           C   - g  a 
      cu ca  ucugugugc gugA  GCU CU UACAGUGUUGC UUG u gc  
      || ||  ||||||||| ||||  ||| || ||||||||||| ||| | || u
      ga gu  agacguacg cacU  CGG GA AUGUUACGACG Aac a cg  
uugguc  c  ca         u    AU   -  C           -   u g  g 

Annotation confidence High

Genome context

15: 14626163-14626269 [+]

Mature ola-miR-107-5p

• Accession: MIMAT0057142
• Description: Oryzias latipes ola-miR-107-5p mature miRNA
• Sequence: 24 - AGCUUCUUUACAGUGUUGCCUUG - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-107-3p

• Accession: MIMAT0022632
• Description: Oryzias latipes ola-miR-107-3p mature miRNA
• Sequence: 61 - AGCAGCAUUGUACAGGGCUAU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8