Stem-loop ssc-mir-107

Accession

MI0002449

Description

Sus scrofa ssc-mir-107 precursor miRNA

Literature search

11 open access papers mention ssc-mir-107
(33 sentences)

Sequence

126 reads, 81 reads per million, 10 experiments

uucucucugcuuucagcuucuuuacaguguugccuuguggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacagagagc
((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))).

Structure

-      c      --c    u  u           c   u   a 
 uucucu ugcuuu   agcu cu uacaguguugc uug ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaA   UCGG GA AUGUUACGACG Aac uug g
c      c      CUA    -  C           -   -   a 

Annotation confidence Not enough data

Genome context

chr14: 110407095-110407181 [-]

Mature ssc-miR-107

• Accession: MIMAT0002155
• Description: Sus scrofa ssc-miR-107 mature miRNA
• Sequence: 52 - AGCAGCAUUGUACAGGGCUAUCA - 74
• Evidence: experimental ; cloned [2], 454 [3], Illumina [4-6]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


3. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


4. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


5. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


6. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100