Stem-loop cfa-mir-107

Accession

MI0008072

Description

Canis lupus familiaris cfa-mir-107 precursor miRNA

Literature search

7 open access papers mention cfa-mir-107
(10 sentences)

Sequence

980376 reads, 1647.0 reads per million, 82 experiments

AGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAU
((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))..

Structure

--    U  U           C   u   a 
  AGCU CU UACAGUGUUGC UUG ggc u
  |||| || ||||||||||| ||| ||| g
  UCGG GA AUGUUACGACG Aac uug g
UA    -  C           -   -   a 

Annotation confidence High

Genome context

28: 4706547-4706604 [-]

Mature cfa-miR-107-5p

• Accession: MIMAT0051783
• Description: Canis lupus familiaris cfa-miR-107-5p mature miRNA
• Sequence: 1 - AGCUUCUUUACAGUGUUGCCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-107-3p

• Accession: MIMAT0006666
• Description: Canis lupus familiaris cfa-miR-107-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415