Stem-loop ola-mir-103-1

Accession

MI0019475

Description

Oryzias latipes ola-mir-103-1 precursor miRNA

Sequence

75083 reads, 896.0 reads per million, 49 experiments

ucuccacccugcucugcgcuuuuAGCCUCUUUACAGUGCUGCCUUGUcuucucgcguucaAGCAGCAUUGUACAGGGCUAUGAcggcgcagagagcaugaca
....((..((.(((((((((..(((((.((.(((((((((((.(((............)))))))))))))).)))))))....)))))))))))..))...

Structure

ucuc  cc  g         --uu     U  U           C   Ucuuc 
    ca  cu cucugcgcu    uAGCC CU UACAGUGCUGC UUG     u
    ||  || |||||||||    ||||| || ||||||||||| |||      
    gu  ga gagacgcgg    AUCGG GA AUGUUACGACG Aac     c
-aca  ac  -         cAGU     -  C           -   uugcg 

Annotation confidence High

Genome context

10: 2552790-2552891 [+]

Mature ola-miR-103-1-5p

• Accession: MIMAT0057114
• Description: Oryzias latipes ola-miR-103-1-5p mature miRNA
• Sequence: 24 - AGCCUCUUUACAGUGCUGCCUUGU - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-103-3p

• Accession: MIMAT0022593
• Description: Oryzias latipes ola-miR-103-3p mature miRNA
• Sequence: 61 - AGCAGCAUUGUACAGGGCUAUGA - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8