Stem-loop mml-mir-107

Accession

MI0002754

Description

Macaca mulatta mml-mir-107 precursor miRNA mir-103

Gene
family

RF00129; mir-103

Literature search

1 open access papers mention mml-mir-107
(1 sentences)

Sequence

12445 reads, 94 reads per million, 9 experiments

cucucugcuuucAGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacaga
.(((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure

c   c      --c    U  U           C   u   a 
 ucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 84746619-84746699 [-]

Mature mml-miR-107-3p

• Accession: MIMAT0002458
• Description: Macaca mulatta mml-miR-107-3p mature miRNA
• Sequence: 50 - AGCAGCAUUGUACAGGGCUAUCA - 72
• Evidence: experimental ; Illumina [2]

Mature mml-miR-107-5p

• Accession: MIMAT0026584
• Description: Macaca mulatta mml-miR-107-5p mature miRNA
• Sequence: 13 - AGCUUCUUUACAGUGUUGCCUUG - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45