Stem-loop ccr-mir-107

Accession

MI0023307

Description

Cyprinus carpio ccr-mir-107 precursor miRNA

Literature search

0 open access papers mention ccr-mir-107
(1 sentences)

Sequence

384958 reads, 1453.0 reads per million, 33 experiments

acucugugugcucugAGCUUCUUUACAGUGUUGUCUUGuggcauggagaucaAGCAGCAUUGUACAGGGCUAUCacagcacacugaaca
..((.(((((((.((((((.((.((((((((((.((((............)))))))))))))).)))))..))).))))))).))...

Structure

-ac  u       c   --   U  U          U    uggca 
   uc gugugcu ugA  GCU CU UACAGUGUUG CUUG     u
   || ||||||| |||  ||| || |||||||||| ||||      
   ag cacacga aCU  CGG GA AUGUUACGAC GAac     g
aca  u       c   AU   -  C          -    uagag 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-107-5p

• Accession: MIMAT0058259
• Description: Cyprinus carpio ccr-miR-107-5p mature miRNA
• Sequence: 16 - AGCUUCUUUACAGUGUUGUCUUG - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-107-3p

• Accession: MIMAT0026199
• Description: Cyprinus carpio ccr-miR-107-3p mature miRNA
• Sequence: 53 - AGCAGCAUUGUACAGGGCUAUC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925