Stem-loop fru-mir-107

Accession

MI0003379

Description

Fugu rubripes fru-mir-107 precursor miRNA

Literature search

1 open access papers mention fru-mir-107
(1 sentences)

Sequence

390512 reads, 3874.0 reads per million, 12 experiments

cucccugcucucAGCCUCUUUACGGUGCUGCCUUGuggcaucuugaucaAGCAGCAUUGUACAGGGCUAUGAaggc
...(((..((..((((.((.(((((((((((.(((............)))))))))))))).))))))..))))).

Structure

cuc   gc  uc    U  U           C   uggca 
   ccu  uc  AGCC CU UACGGUGCUGC UUG     u
   |||  ||  |||| || ||||||||||| |||      
   gga  AG  UCGG GA AUGUUACGACG Aac     c
--c   --  UA    -  C           -   uaguu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602536.1: 11331215-11331290 [+]

Mature fru-miR-107-5p

• Accession: MIMAT0052891
• Description: Fugu rubripes fru-miR-107-5p mature miRNA
• Sequence: 13 - AGCCUCUUUACGGUGCUGCCUUG - 35
• Evidence: not_experimental

Mature fru-miR-107-3p

• Accession: MIMAT0003043
• Description: Fugu rubripes fru-miR-107-3p mature miRNA
• Sequence: 50 - AGCAGCAUUGUACAGGGCUAUGA - 72
• Evidence: not_experimental

References