Stem-loop cgr-mir-107

Accession

MI0020380

Description

Cricetulus griseus cgr-mir-107 precursor miRNA

Literature search

2 open access papers mention cgr-mir-107
(3 sentences)

Sequence

729877 reads, 1901.0 reads per million, 55 experiments

cucucugcuuucAGCUUCUUUACAGUGUUGCCUUGUggcauggaauucaAGCAGCAUUGUACAGGGCUAUCaaagcacug
.....((((((.((((.((.(((((((((((.(((............)))))))))))))).))))))...))))))...

Structure

cucuc      --c    U  U           C   Uggca 
     ugcuuu   AGCU CU UACAGUGUUGC UUG     u
     ||||||   |||| || ||||||||||| |||      
     acgaaa   UCGG GA AUGUUACGACG Aac     g
--guc      CUA    -  C           -   uuaag 

Annotation confidence High

Genome context

JH000132.1: 205737-205816 [-]

Mature cgr-miR-107-5p

• Accession: MIMAT0052430
• Description: Cricetulus griseus cgr-miR-107-5p mature miRNA
• Sequence: 13 - AGCUUCUUUACAGUGUUGCCUUGU - 36
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-107-3p

• Accession: MIMAT0023734
• Description: Cricetulus griseus cgr-miR-107-3p mature miRNA
• Sequence: 50 - AGCAGCAUUGUACAGGGCUAUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75