miRBase entry: 21392545

Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

PubMed ID 21392545
Authors "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
Journal "J Biotechnol
Volume 153
Pages 62-75

There are 218 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
cgr-mir-21 MI0005725 112581 JH000425.1 1284121 1284212 + High
cgr-mir-7a MI0016998 2222 JH002901.1 118788 119011 + -
cgr-let-7a-1 MI0020368 106213 JH000030.1 3831224 3831323 - High
cgr-let-7b MI0020369 58357 JH002598.1 107133 107232 + High
cgr-let-7c-1 MI0020370 108887 JH000146.1 136597 136676 - High
cgr-let-7d MI0020371 5253 JH000030.1 3829137 3829231 - High
cgr-let-7f MI0020372 56184 JH000030.1 3830872 3830971 - High
cgr-let-7g MI0020373 4819 JH000078.1 2992041 2992137 + High
cgr-let-7i MI0020374 1419 None None High
cgr-mir-1 MI0020375 41 JH000364.1 318685 318774 + High
cgr-mir-100 MI0020376 6487 JH002112.1 153527 153602 - High
cgr-mir-101b MI0020377 4822 JH000649.1 945587 945663 + High
cgr-mir-103 MI0020378 8684 JH000136.1 1241800 1241878 - High
cgr-mir-106b MI0020379 1394 JH001296.1 179099 179179 - High
cgr-mir-107 MI0020380 179 JH000132.1 205737 205816 - High
cgr-mir-10a MI0020381 38558 JH000166.1 154110 154190 + High
cgr-mir-10b MI0020382 22333 JH000109.1 1421205 1421284 - High
cgr-mir-122 MI0020383 104 JH000659.1 638593 638672 - -
cgr-mir-124 MI0020384 61 JH000824.1 714302 714381 + -
cgr-mir-125a MI0020385 628 None None High
cgr-mir-125b-1 MI0020386 26059 JH000146.1 89052 89129 - High
cgr-mir-126a MI0020387 27 JH003541.1 12281 12360 + High
cgr-mir-1260 MI0020388 145 JH000033.1 3309782 3309861 + -
cgr-mir-1271 MI0020389 96 JH000102.1 1664392 1664471 - High
cgr-mir-1285 MI0020390 73 JH000291.1 615931 616020 + -
cgr-mir-128 MI0020391 94 JH000082.1 511517 511591 + High
cgr-mir-129 MI0020392 43 JH000073.1 1210829 1210908 + High
cgr-mir-1306 MI0020393 83 JH000319.1 1034288 1034367 + Medium
cgr-mir-130a MI0020394 1123 JH000637.1 459670 459750 - High
cgr-mir-130b MI0020395 104 JH000340.1 1046830 1046908 - Medium
cgr-mir-132 MI0020396 117 JH000768.1 800228 800304 + High
cgr-mir-134 MI0020397 81 JH000884.1 63116 63195 + -
cgr-mir-1343 MI0020398 64 JH000070.1 1730781 1730870 + High
cgr-mir-137 MI0020399 209 JH002736.1 64351 64428 - High
cgr-mir-138 MI0020400 50 JH000405.1 970785 970864 + -
cgr-mir-139 MI0020401 187 JH000978.1 521937 522014 + High
cgr-mir-140 MI0020402 9494 JH000993.1 542169 542249 + High
cgr-mir-141 MI0020403 50 JH000031.1 4002691 4002780 + High
cgr-mir-142 MI0020404 52 JH000425.1 187817 187895 - Medium
cgr-mir-143 MI0020405 106 JH000986.1 202913 202992 - High
cgr-mir-144 MI0020406 41 JH001459.1 338259 338338 + High
cgr-mir-146a MI0020407 659 JH000303.1 1014971 1015050 + Medium
cgr-mir-146b MI0020408 3546 JH000895.1 588891 588969 + High
cgr-mir-147 MI0020409 96 JH000507.1 1007910 1007989 - -
cgr-mir-148b MI0020410 1261 JH001354.1 427 504 + High
cgr-mir-149 MI0020411 466 JH000147.1 456759 456839 + High
cgr-mir-151 MI0020412 4048 JH001423.1 191400 191474 + High
cgr-mir-152 MI0020413 183 JH000166.1 680189 680266 + High
cgr-mir-154 MI0020414 21 JH000884.1 68436 68512 + High
cgr-mir-155 MI0020415 100 JH000510.1 757679 757768 - -
cgr-mir-15a MI0020416 782 JH000694.1 802850 802927 + High
cgr-mir-15b MI0020417 583 JH001756.1 252840 252917 + High
cgr-mir-16-1 MI0020418 1256 JH000694.1 802988 803071 + High
cgr-mir-17 MI0020419 3908 JH001979.1 109700 109777 - High
cgr-mir-181a MI0020420 1476 JH000549.1 850517 850597 + High
cgr-mir-181b MI0020421 1107 JH000549.1 850698 850775 + High
cgr-mir-181c MI0020422 281 JH000286.1 1109008 1109087 + High
cgr-mir-181d MI0020423 745 JH000286.1 1109186 1109266 + High
cgr-mir-182 MI0020424 104 JH000073.1 2318803 2318902 - -
cgr-mir-183 MI0020425 71 JH000073.1 2322620 2322699 - High
cgr-mir-1839 MI0020426 426 JH001657.1 14500 14579 + Medium
cgr-mir-184 MI0020427 86 JH000018.1 1675074 1675163 + -
cgr-mir-1843 MI0020428 87 JH000107.1 1106577 1106656 + High
cgr-mir-185 MI0020429 554 JH000319.1 980130 980203 + High
cgr-mir-186 MI0020430 2777 JH000264.1 705202 705280 - High
cgr-mir-187 MI0020431 72 JH000234.1 1449802 1449881 - High
cgr-mir-188 MI0020432 125 JH000611.1 78196 78275 + -
cgr-mir-18a MI0020433 385 JH001979.1 109537 109639 - High
cgr-mir-190a MI0020434 42 JH000151.1 1147508 1147587 + High
cgr-mir-1903 MI0020435 52 JH000062.1 1861154 1861223 + -
cgr-mir-190b MI0020436 53 JH000275.1 1258190 1258269 + -
cgr-mir-191 MI0020437 8590 JH001800.1 109036 109118 + High
cgr-mir-192 MI0020438 806 JH001367.1 289739 289818 - High
cgr-mir-193b MI0020439 71 JH000052.1 3322770 3322847 + High
cgr-mir-194-1 MI0020440 456 JH000002.1 3326794 3326873 + High
cgr-mir-1949 MI0020441 52 JH000776.1 128277 128366 + -
cgr-mir-195 MI0020442 118 JH000064.1 2276744 2276823 + High
cgr-mir-1956 MI0020443 83 JH003015.1 90919 90998 - -
cgr-mir-196a MI0020444 10406 JH000760.1 79295 79371 - High
cgr-mir-196b MI0020445 727 JH000291.1 82690 82769 - -
cgr-mir-196c MI0020446 73 JH000166.1 102961 103040 + High
cgr-mir-1973 MI0020447 67 JH000450.1 1005041 1005100 + -
cgr-mir-199a-1 MI0020448 359 JH000173.1 721995 722074 + High
cgr-mir-199b MI0020449 43 None None High
cgr-mir-19a MI0020450 114 JH001979.1 109407 109486 - High
cgr-mir-19b MI0020451 253 JH001979.1 109073 109152 - High
cgr-mir-200b MI0020452 65 JH001219.1 151410 151499 + High
cgr-mir-200c MI0020453 104 JH000031.1 4002276 4002365 + High
cgr-mir-204 MI0020454 158 JH001792.1 105263 105342 - High
cgr-mir-205 MI0020455 115 JH000117.1 1381123 1381202 - High
cgr-mir-206 MI0020456 82 JH001075.1 474490 474569 - -
cgr-mir-20a MI0020457 3765 JH001979.1 109227 109306 - High
cgr-mir-210 MI0020458 292 JH001184.1 77044 77122 - High
cgr-mir-212 MI0020459 33 JH000768.1 800029 800094 + -
cgr-mir-214 MI0020460 27 JH000079.1 370058 370135 - High
cgr-mir-215 MI0020461 2970 JH000002.1 3327065 3327141 + High
cgr-mir-218a MI0020462 115 JH000047.1 925537 925616 + -
cgr-mir-22 MI0020463 2824 JH003801.1 17001 17079 - High
cgr-mir-221 MI0020464 1711 JH000515.1 1085312 1085393 + High
cgr-mir-222 MI0020465 759 JH000515.1 1084728 1084808 + Medium
cgr-mir-23a MI0020466 1072 JH000286.1 1079003 1079078 - High
cgr-mir-23b MI0020467 167 JH002734.1 36660 36736 - High
cgr-mir-24 MI0020468 6630 JH000286.1 1078704 1078781 - High
cgr-mir-2424 MI0020469 59 JH000031.1 3549956 3550030 + Low
cgr-mir-25 MI0020470 1753 JH001296.1 178664 178762 - High
cgr-mir-26a-2 MI0020471 1423 JH000814.1 743060 743138 - High
cgr-mir-26b MI0020472 259 JH002214.1 192684 192760 + High
cgr-mir-27a MI0020473 2590 JH000286.1 1078836 1078916 - High
cgr-mir-27b MI0020474 854 JH002734.1 36430 36511 - High
cgr-mir-28 MI0020475 2319 JH000017.1 3563425 3563505 - High
cgr-mir-296 MI0020476 215 JH000054.1 2908788 2908862 + High
cgr-mir-298 MI0020477 134 JH000054.1 2908283 2908363 + High
cgr-mir-29a MI0020478 4512 JH005876.1 8380 8457 - High
cgr-mir-29b MI0020479 402 JH005876.1 8713 8795 - High
cgr-mir-29c MI0020480 62 JH002029.1 103082 103157 + High
cgr-mir-300 MI0020481 80 JH000884.1 52952 53041 + -
cgr-mir-301a MI0020482 42 JH000425.1 767045 767123 - High
cgr-mir-3072 MI0020483 72 JH000884.1 77692 77767 + High
cgr-mir-30a MI0020484 66 JH000029.1 3496113 3496194 - High
cgr-mir-30b MI0020485 192 JH020411.1 249 327 - High
cgr-mir-30c-2 MI0020486 511 JH000029.1 3475422 3475500 - High
cgr-mir-30d MI0020487 13467 JH050121.1 453 542 + High
cgr-mir-30e MI0020488 4775 JH000283.1 438667 438749 + High
cgr-mir-31 MI0020489 704 JH001015.1 239153 239229 - High
cgr-mir-32 MI0020490 122 JH000228.1 1290648 1290728 - High
cgr-mir-320a MI0020491 2009 JH000034.1 1890160 1890239 - Medium
cgr-mir-322 MI0020492 1614 JH000353.1 1175630 1175707 - High
cgr-mir-324 MI0020493 87 None None High
cgr-mir-325 MI0020494 31 JH000560.1 45184 45261 - High
cgr-mir-326 MI0020495 98 JH003146.1 63107 63186 - High
cgr-mir-328 MI0020496 83 JH000973.1 241883 241962 - High
cgr-mir-33 MI0020497 118 JH001848.1 153548 153627 + High
cgr-mir-331 MI0020498 51 JH000270.1 1491783 1491856 - High
cgr-mir-338 MI0020499 52 JH000058.1 2288146 2288225 - High
cgr-mir-339 MI0020500 56 JH000745.1 169021 169100 + High
cgr-mir-340 MI0020501 125 JH000566.1 523039 523122 + High
cgr-mir-342 MI0020502 111 JH000414.1 950950 951034 + High
cgr-mir-344 MI0020503 52 JH001601.1 41086 41165 + -
cgr-mir-345 MI0020504 135 JH000414.1 1101289 1101368 + High
cgr-mir-34a MI0020505 54 JH007589.1 3416 3500 - High
cgr-mir-34b MI0020506 306 JH000115.1 808303 808380 + High
cgr-mir-34c MI0020507 53089 JH000115.1 808827 808900 + High
cgr-mir-350 MI0020508 116 JH000177.1 67260 67339 + High
cgr-mir-361 MI0020509 76 JH001478.1 84893 84972 + Medium
cgr-mir-362 MI0020510 76 JH000611.1 85232 85311 + High
cgr-mir-365-1 MI0020511 74 JH000052.1 3327293 3327373 + Medium
cgr-mir-369 MI0020512 76 JH000884.1 73327 73401 + High
cgr-mir-374 MI0020513 199 JH000656.1 639645 639715 + High
cgr-mir-377 MI0020514 62 JH000884.1 70467 70543 + High
cgr-mir-378 MI0020515 58625 JH000650.1 40907 40985 + High
cgr-mir-379 MI0020516 52 JH000884.1 36528 36607 + High
cgr-mir-381 MI0020517 66 JH000884.1 55360 55449 + -
cgr-mir-382 MI0020518 115 JH000884.1 62756 62835 + High
cgr-mir-384 MI0020519 34 JH000560.1 15553 15634 - High
cgr-mir-409 MI0020520 177 JH000884.1 73057 73129 + High
cgr-mir-410 MI0020521 70 JH000884.1 73630 73704 + High
cgr-mir-412 MI0020522 46 JH000884.1 73204 73277 + High
cgr-mir-423 MI0020523 3075 JH000631.1 520509 520586 - High
cgr-mir-425 MI0020524 684 JH001800.1 109479 109558 + High
cgr-mir-429 MI0020525 42 JH001219.1 153203 153292 + Medium
cgr-mir-450a MI0020526 150 JH000353.1 1169406 1169480 - High
cgr-mir-450b MI0020527 111 JH000353.1 1169242 1169317 - High
cgr-mir-455 MI0020528 119 JH000394.1 390033 390110 - Medium
cgr-mir-484 MI0020529 74 JH000332.1 1297236 1297306 - -
cgr-mir-486 MI0020530 72 JH000379.1 1110602 1110684 + High
cgr-mir-496 MI0020531 44 JH000884.1 69107 69196 + -
cgr-mir-497 MI0020532 121 JH000064.1 2276442 2276522 + Medium
cgr-mir-499 MI0020533 28 JH000254.1 1293015 1293091 + High
cgr-mir-500 MI0020534 74 None None High
cgr-mir-501 MI0020535 153 None None High
cgr-mir-503 MI0020536 327 JH000353.1 1175314 1175393 - High
cgr-mir-504 MI0020537 109 JH000262.1 424466 424565 - -
cgr-mir-505 MI0020538 162 JH000262.1 1570368 1570446 - Medium
cgr-mir-532 MI0020539 76 JH000611.1 77734 77810 + High
cgr-mir-542 MI0020540 613 JH000353.1 1170704 1170782 - High
cgr-mir-582 MI0020541 58 JH000035.1 1797957 1798036 - High
cgr-mir-598 MI0020542 65 JH000094.1 1622996 1623075 - High
cgr-mir-615 MI0020543 117 JH000760.1 38218 38301 - High
cgr-mir-628 MI0020544 116 JH000003.1 3400307 3400406 - -
cgr-mir-632 MI0020545 216 JH000022.1 2064613 2064702 + -
cgr-mir-652 MI0020546 633 JH001000.1 384867 384946 - High
cgr-mir-653 MI0020547 30 JH000059.1 2589071 2589150 - High
cgr-mir-664 MI0020548 167 JH000002.1 3254500 3254578 + High
cgr-mir-671 MI0020549 602 JH000263.1 907955 908033 - High
cgr-mir-672 MI0020550 78 None None -
cgr-mir-674 MI0020551 157 JH000389.1 1482967 1483046 - High
cgr-mir-702 MI0020552 107 JH000243.1 1813802 1813881 + -
cgr-mir-708 MI0020553 86 JH001544.1 78521 78620 - High
cgr-mir-744 MI0020555 684 JH000072.1 2126137 2126233 + High
cgr-mir-7b MI0020556 159 JH000282.1 434229 434308 + High
cgr-mir-872 MI0020557 4027 JH000371.1 424956 425034 - High
cgr-mir-874 MI0020558 62 JH002506.1 75046 75125 - High
cgr-mir-9 MI0020559 37 JH000258.1 941049 941128 + High
cgr-mir-92a MI0020560 5864 JH001979.1 108958 109035 - High
cgr-mir-92b MI0020561 80 JH000275.1 397429 397510 - High
cgr-mir-93 MI0020562 7651 JH001296.1 178880 178960 - High
cgr-mir-98 MI0020563 221 JH000201.1 1737577 1737656 + -
cgr-mir-99a MI0020564 1448 JH000146.1 137344 137421 - High
cgr-mir-6091 MI0020565 137 JH000161.1 863860 863939 - Medium
cgr-mir-6092 MI0020566 125 JH000058.1 3412039 3412118 - High
rno-mir-221 MI0000961 312 chrX 3684480 3684588 + High
rno-mir-149 MI0030351 7233 chr9 100016441 100016529 + High
rno-mir-21 MI0000850 8269 chr10 73902210 73902301 - High
cgr-mir-17 MI0020419 3908 JH001979.1 109700 109777 - High
cgr-mir-31 MI0020489 704 JH001015.1 239153 239229 - High
cgr-mir-221 MI0020464 1711 JH000515.1 1085312 1085393 + High
cgr-mir-149 MI0020411 466 JH000147.1 456759 456839 + High
cgr-mir-21 MI0005725 112581 JH000425.1 1284121 1284212 + High
cgr-mir-92a MI0020560 5864 JH001979.1 108958 109035 - High
mmu-mir-17 MI0000687 2249 14 115281103 115281186 + High
mmu-mir-31 MI0000579 615 4 88828794 88828899 - High
mmu-mir-221 MI0000709 2711 X 19012533 19012627 - High
mmu-mir-149 MI0000171 274 1 92778100 92778165 + High
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-31 MI0000089 2296 chr9 21512115 21512185 - High
hsa-mir-221 MI0000298 5088 chrX 45746157 45746266 - High
hsa-mir-149 MI0000478 225 chr2 240456001 240456089 + High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High



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