Stem-loop cgr-mir-34b

Accession

MI0020506

Description

Cricetulus griseus cgr-mir-34b precursor miRNA

Literature search

2 open access papers mention cgr-mir-34b
(4 sentences)

Sequence

20708 reads, 287 reads per million, 6 experiments

ucgguuuguAGGCAGUGUAAUUAGCUGAUUGUaccgcggugcugacAAUCACUAACUCCACUGCCAUCaaaacaaggc
...((((...(((((((...((((.(((((((.(.((...)).))))))))))))...)))))))....)))).....

Structure

--ucg    -guA       UAA    C       a c  g 
     guuu    GGCAGUG   UUAG UGAUUGU c gc  
     ||||    |||||||   |||| ||||||| | || g
     caaa    CCGUCAC   AAUC ACUAAca g cg  
cggaa    aCUA       CUC    -       - u  u 

Annotation confidence High

Genome context

JH000115.1: 808303-808380 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-34b

Mature cgr-miR-34b-5p

• Accession: MIMAT0023927
• Description: Cricetulus griseus cgr-miR-34b-5p mature miRNA
• Sequence: 10 - AGGCAGUGUAAUUAGCUGAUUGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-34b-3p

• Accession: MIMAT0023928
• Description: Cricetulus griseus cgr-miR-34b-3p mature miRNA
• Sequence: 47 - AAUCACUAACUCCACUGCCAUC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75