Stem-loop cgr-mir-16

Accession

MI0020418

Description

Cricetulus griseus cgr-mir-16 precursor miRNA

Literature search

1 open access papers mention cgr-mir-16
(2 sentences)

Sequence

91875 reads, 1256 reads per million, 6 experiments

gcagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauucugaaauuaucuCCAGUAUUAACUGUGCUGCUGAAguaagguugg
((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))...

Structure

---  ag   c          -  A        C u   gauu 
   gc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
   ||  ||| |||||||||| || |||||||| | |||     
   ug  aug AGUCGUCGUG CA UUAUGACC c auu    u
ggu  ga   A          U  A        u u   aaag 

Annotation confidence High

Genome context

JH000694.1: 802988-803071 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-16

Mature cgr-miR-16-5p

• Accession: MIMAT0023793
• Description: Cricetulus griseus cgr-miR-16-5p mature miRNA
• Sequence: 10 - UAGCAGCACGUAAAUAUUGGCG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-16-3p

• Accession: MIMAT0023794
• Description: Cricetulus griseus cgr-miR-16-3p mature miRNA
• Sequence: 52 - CCAGUAUUAACUGUGCUGCUGAA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75