Stem-loop cgr-mir-142

Accession

MI0020404

Description

Cricetulus griseus cgr-mir-142 precursor miRNA

Sequence

2736 reads, 38 reads per million, 6 experiments

agugcagucaCCCAUAAAGUAGAAAGCACUACuaacagcacuggaggguGUAGUGUUUCCUACUUUAUGGaugagugua
..((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))

Structure

ag    g   C           A         uaa ag a 
  ugca uca CCAUAAAGUAG AAGCACUAC   c  c c
  |||| ||| ||||||||||| |||||||||   |  |  
  augu agu GGUAUUUCAUC UUUGUGAUG   g  g u
--    g   a           C         -ug ga g 

Annotation confidence Low

Genome context

JH000425.1: 187817-187895 [-]

Mature cgr-miR-142-5p

• Accession: MIMAT0023770
• Description: Cricetulus griseus cgr-miR-142-5p mature miRNA
• Sequence: 11 - CCCAUAAAGUAGAAAGCACUAC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-142-3p

• Accession: MIMAT0023771
• Description: Cricetulus griseus cgr-miR-142-3p mature miRNA
• Sequence: 50 - GUAGUGUUUCCUACUUUAUGG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75