Stem-loop cgr-mir-362

Accession

MI0020510

Description

Cricetulus griseus cgr-mir-362 precursor miRNA

Sequence

9900 reads, 77.0 reads per million, 15 experiments

cuccucucgAAUCCUUGGAACCUAGGUGUGAGUGCugcuucagugcAACACACCUGUUCAAGGAUUCaaagaggcugagc
..(((((.(((((((((((...((((((((.((((((...))))))..)))))))))))))))))))..)))))......

Structure

----cu     -c           ACC        -A      c 
      ccucu  gAAUCCUUGGA   UAGGUGUG  GUGCug  
      |||||  |||||||||||   ||||||||  |||||| u
      ggaga  CUUAGGAACUU   GUCCACAC  cgugac  
cgaguc     aa           ---        AA      u 

Annotation confidence High

Genome context

JH000611.1: 85232-85311 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-362

Mature cgr-miR-362-5p

• Accession: MIMAT0023934
• Description: Cricetulus griseus cgr-miR-362-5p mature miRNA
• Sequence: 10 - AAUCCUUGGAACCUAGGUGUGAGUGC - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-362-3p

• Accession: MIMAT0052469
• Description: Cricetulus griseus cgr-miR-362-3p mature miRNA
• Sequence: 47 - AACACACCUGUUCAAGGAUUC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75