Stem-loop cgr-mir-450a

Accession

MI0020526

Description

Cricetulus griseus cgr-mir-450a precursor miRNA

Sequence

54925 reads, 289.0 reads per million, 55 experiments

gcugaacuguUUUUGCGAUGUGUUCCUAAUAUguacuacaauuauAUUGGGAACAUUUUGCAUAAAUaguuuugu
((.(((((((((.(((((.((((((((((((((.........)))))))))))))).))))).))))))))).))

Structure

  u         U     U              uac 
gc gaacuguUU UGCGA GUGUUCCUAAUAUg   u
|| ||||||||| ||||| ||||||||||||||   a
ug uuugaUAAA ACGUU UACAAGGGUUAuau   c
  u         U     U              uaa 

Annotation confidence High

Genome context

JH000353.1: 1169406-1169480 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cgr-mir-450a

Mature cgr-miR-450a-5p

• Accession: MIMAT0023961
• Description: Cricetulus griseus cgr-miR-450a-5p mature miRNA
• Sequence: 11 - UUUUGCGAUGUGUUCCUAAUAU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-450a-3p

• Accession: MIMAT0052474
• Description: Cricetulus griseus cgr-miR-450a-3p mature miRNA
• Sequence: 46 - AUUGGGAACAUUUUGCAUAAAU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75