Stem-loop cgr-mir-196c

Accession

MI0020446

Description

Cricetulus griseus cgr-mir-196c precursor miRNA

Sequence

2366 reads, 10.0 reads per million, 46 experiments

ugagugaauUAGGUAGUUUCGUGUUGUUGGGccuggcuuucugaacaCAACGACAUCCAACCACCUGAUucacggcaguu
...(((((((((((.(((..((((((((((..(.........)..).)))))))))..))).))))))))))).......

Structure

----uga           A   UC         - Gc ugg 
       gugaauUAGGU GUU  GUGUUGUUG G  c   c
       ||||||||||| |||  ||||||||| |  |   u
       cacuUAGUCCA CAA  UACAGCAAC c  g   u
uugacgg           C   CC         a aa ucu 

Annotation confidence High

Genome context

JH000166.1: 102961-103040 [+]

Mature cgr-miR-196c-5p

• Accession: MIMAT0023834
• Description: Cricetulus griseus cgr-miR-196c-5p mature miRNA
• Sequence: 10 - UAGGUAGUUUCGUGUUGUUGGG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-196c-3p

• Accession: MIMAT0052446
• Description: Cricetulus griseus cgr-miR-196c-3p mature miRNA
• Sequence: 48 - CAACGACAUCCAACCACCUGAU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75