Stem-loop cgr-let-7f

Accession

MI0020372

Description

Cricetulus griseus cgr-let-7f precursor miRNA

Literature search

1 open access papers mention cgr-let-7f
(4 sentences)

Sequence

9502561 reads, 29664.0 reads per million, 55 experiments

ucuaucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcugaggaguagac
(((.((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))))))......

Structure

------   a    a U                       ---------       u 
      ucu ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
      ||| |||| | |||||||||||||||||||||||         ||||||| a
      agg aguc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
cagaug   -    - C                       gaggacuug       u 

Annotation confidence High

Genome context

JH000030.1: 3830872-3830971 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-let-7f

Mature cgr-let-7f-5p

• Accession: MIMAT0023721
• Description: Cricetulus griseus cgr-let-7f-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGAUUGUAUAGUU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-let-7f-3p

• Accession: MIMAT0052428
• Description: Cricetulus griseus cgr-let-7f-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUAUUGCCUUCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75