Stem-loop cgr-mir-195

Accession

MI0020442

Description

Cricetulus griseus cgr-mir-195 precursor miRNA

Literature search

1 open access papers mention cgr-mir-195
(2 sentences)

Sequence

47458 reads, 282.0 reads per million, 55 experiments

uccuggcucUAGCAGCACAGAAAUAUUGGCAcugggaagcgagucugCCAAUAUUGGCUGUGUUGCUCCAggcagggugg
(((((.((..((((((((((.((((((((((((.(....).)))..)))))))))..))))))))))..)).)))))...

Structure

---     g  cU          -A         --   g g 
   uccug cu  AGCAGCACAG  AAUAUUGGC  Acu g a
   ||||| ||  ||||||||||  |||||||||  ||| |  
   gggac gA  UCGUUGUGUC  UUAUAACCg  uga c a
ggu     g  CC          GG         uc   g g 

Annotation confidence High

Genome context

JH000064.1: 2276744-2276823 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-195

Mature cgr-miR-195-5p

• Accession: MIMAT0023829
• Description: Cricetulus griseus cgr-miR-195-5p mature miRNA
• Sequence: 10 - UAGCAGCACAGAAAUAUUGGCA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-195-3p

• Accession: MIMAT0052444
• Description: Cricetulus griseus cgr-miR-195-3p mature miRNA
• Sequence: 48 - CCAAUAUUGGCUGUGUUGCUCCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75