Stem-loop cgr-mir-338

Accession

MI0020499

Description

Cricetulus griseus cgr-mir-338 precursor miRNA

Literature search

2 open access papers mention cgr-mir-338
(7 sentences)

Sequence

3576 reads, 17.0 reads per million, 54 experiments

gccguccuccccAACAACAUCCUGGUGCUGAGUgauggcacaggugacUCCAGCAUCAGUGAUUUUGUUGAagagggcag
...((((((..((((((.(((((((((((((((.((.......)).))).))))))))).))).))))))..))))))..

Structure

gcc      cc      C   -         -   g  gg 
   guccuc  cAACAA AUC CUGGUGCUG AGU au  c
   ||||||  |||||| ||| ||||||||| ||| ||  a
   cgggag  GUUGUU UAG GACUACGAC Uca ug  c
-ga      aA      U   U         C   g  ga 

Annotation confidence High

Genome context

JH000058.1: 2288146-2288225 [-]

Mature cgr-miR-338-5p

• Accession: MIMAT0052465
• Description: Cricetulus griseus cgr-miR-338-5p mature miRNA
• Sequence: 13 - AACAACAUCCUGGUGCUGAGU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-338-3p

• Accession: MIMAT0023918
• Description: Cricetulus griseus cgr-miR-338-3p mature miRNA
• Sequence: 49 - UCCAGCAUCAGUGAUUUUGUUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75