Stem-loop cgr-mir-339

Accession

MI0020500

Description

Cricetulus griseus cgr-mir-339 precursor miRNA

Sequence

4881 reads, 18.0 reads per million, 55 experiments

cagccaccgUCCCUGUCCUCCAGGAGCUCACguaugccugccugUGAGCACCUCGAUGACAGAGCCGguguccaccccug
....(((((.(.(((((.((.(((.(((((((((....)))..)))))).))).)).))))).).)))))..........

Structure

------cagc     U C     C  C   A      --   u 
          caccg C CUGUC UC AGG GCUCAC  gua g
          ||||| | ||||| || ||| ||||||  |||  
          gugGC G GACAG AG UCC CGAGUg  cgu c
guccccaccu     C A     U  C   A      uc   c 

Annotation confidence High

Genome context

JH000745.1: 169021-169100 [+]

Mature cgr-miR-339-5p

• Accession: MIMAT0023919
• Description: Cricetulus griseus cgr-miR-339-5p mature miRNA
• Sequence: 10 - UCCCUGUCCUCCAGGAGCUCAC - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-339-3p

• Accession: MIMAT0061412
• Description: Cricetulus griseus cgr-miR-339-3p mature miRNA
• Sequence: 45 - UGAGCACCUCGAUGACAGAGCCG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75