Stem-loop cgr-mir-19a

Accession

MI0020450

Description

Cricetulus griseus cgr-mir-19a precursor miRNA

Literature search

3 open access papers mention cgr-mir-19a
(4 sentences)

Sequence

51287 reads, 520.0 reads per million, 55 experiments

gcagcccucuguuAGUUUUGCAUACUUGCACUACaagaagaaugcaguUGUGCAAAUCUAUGCAAAACUGAugguggccu
...(((..((((((((((((((((.((((((.((............)).))))))...)))))))))))))))).)))..

Structure

gca   cu                --C      U  aagaa 
   gcc  cuguuAGUUUUGCAUA   UUGCAC AC     g
   |||  ||||||||||||||||   |||||| ||      
   cgg  gguAGUCAAAACGUAU   AACGUG ug     a
-uc   -u                CUA      U  acgua 

Annotation confidence High

Genome context

JH001979.1: 109407-109486 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cgr-mir-19a

Mature cgr-miR-19a-5p

• Accession: MIMAT0052449
• Description: Cricetulus griseus cgr-miR-19a-5p mature miRNA
• Sequence: 14 - AGUUUUGCAUACUUGCACUAC - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-19a-3p

• Accession: MIMAT0023839
• Description: Cricetulus griseus cgr-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75