Stem-loop cgr-mir-382

Accession

MI0020518

Description

Cricetulus griseus cgr-mir-382 precursor miRNA

Sequence

363 reads, 3.0 reads per million, 18 experiments

acuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuugugacgAAUCAUUCACGGACAACACUUUuuucaguaccaaa
..(((((((((.(((((((((((..(((((((.........).))))))..)))))))))))..))))))))).......

Structure

-----ac         -A           UG      - uuu 
       uugaagaGA  GUUGUUCGUGG  GAUUCG c   a
       |||||||||  |||||||||||  |||||| |   c
       gacuuuUUU  CAACAGGCACU  CUAAgc g   u
aaaccau         CA           UA      a ugu 

Annotation confidence High

Genome context

JH000884.1: 62756-62835 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from cgr-mir-382

Mature cgr-miR-382-5p

• Accession: MIMAT0023947
• Description: Cricetulus griseus cgr-miR-382-5p mature miRNA
• Sequence: 10 - GAAGUUGUUCGUGGUGGAUUCG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-382-3p

• Accession: MIMAT0052472
• Description: Cricetulus griseus cgr-miR-382-3p mature miRNA
• Sequence: 46 - AAUCAUUCACGGACAACACUUU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75