Stem-loop cgr-mir-31

Accession

MI0020489

Description

Cricetulus griseus cgr-mir-31 precursor miRNA

Literature search

2 open access papers mention cgr-mir-31
(3 sentences)

Sequence

205047 reads, 955.0 reads per million, 55 experiments

ccuggagaggAGGCAAGAUGCUGGCAUAGCUGUUGaacuagaaccUGCUAUGCCAACAUAUUGCCAUCUuuccuguc
...(((((((.(((((.(((.(((((((((.(((.......)))..))))))))).))).))))).)))))))....

Structure

-ccu       A     G   C         -U   Ga 
    ggagagg GGCAA AUG UGGCAUAGC  GUU  a
    ||||||| ||||| ||| |||||||||  |||  c
    ccuuUCU CCGUU UAC ACCGUAUCG  caa  u
cugu       A     A   A         Uc   ga 

Annotation confidence High

Genome context

JH001015.1: 239153-239229 [-]

Mature cgr-miR-31-5p

• Accession: MIMAT0023902
• Description: Cricetulus griseus cgr-miR-31-5p mature miRNA
• Sequence: 11 - AGGCAAGAUGCUGGCAUAGCUGUUG - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-31-3p

• Accession: MIMAT0023903
• Description: Cricetulus griseus cgr-miR-31-3p mature miRNA
• Sequence: 46 - UGCUAUGCCAACAUAUUGCCAUCU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75