Stem-loop cgr-mir-345

Accession

MI0020504

Description

Cricetulus griseus cgr-mir-345 precursor miRNA

Sequence

5740 reads, 15.0 reads per million, 54 experiments

uccaggccuGCUGACUCCUAGUCCAGUGCUugugguggcuacugggCCCUGAGCUAGGGGUCUGGAGgccuggguuugau
(((((((((.(.((((((((((.(((.((((((((...)))).)))).))).)))))))))).).)))))))))......

Structure

------         G U          C   U    -    u 
      uccaggccu C GACUCCUAGU CAG GCUu gugg  
      ||||||||| | |||||||||| ||| |||| |||| g
      ggguccgGA G CUGGGGAUCG GUC Cggg cauc  
uaguuu         G U          A   C    u    g 

Annotation confidence High

Genome context

JH000414.1: 1101289-1101368 [+]

Mature cgr-miR-345-5p

• Accession: MIMAT0023925
• Description: Cricetulus griseus cgr-miR-345-5p mature miRNA
• Sequence: 10 - GCUGACUCCUAGUCCAGUGCU - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-345-3p

• Accession: MIMAT0052466
• Description: Cricetulus griseus cgr-miR-345-3p mature miRNA
• Sequence: 47 - CCCUGAGCUAGGGGUCUGGAG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75