Stem-loop cgr-mir-30a

Accession

MI0020484

Description

Cricetulus griseus cgr-mir-30a precursor miRNA

Literature search

1 open access papers mention cgr-mir-30a
(4 sentences)

Sequence

3419 reads, 47 reads per million, 6 experiments

agugagcgacUGUAAACAUCCUCGACUGGAAGCugugaagccacaaaugggCUUUCAGUCGGAUGUUUGCAGCugccuacug
((((.(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).))).)))).

Structure

-    a   a            UC           -----   a 
 agug gcg cUGUAAACAUCC  GACUGGAAGCu     gug a
 |||| ||| ||||||||||||  |||||||||||     |||  
 ucau cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
g    c   C            --           guaaa   c 

Annotation confidence Low

Genome context

JH000029.1: 3496113-3496194 [-]

Mature cgr-miR-30a-5p

• Accession: MIMAT0023894
• Description: Cricetulus griseus cgr-miR-30a-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUCGACUGGAAGC - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-30a-3p

• Accession: MIMAT0023895
• Description: Cricetulus griseus cgr-miR-30a-3p mature miRNA
• Sequence: 52 - CUUUCAGUCGGAUGUUUGCAGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75