Stem-loop cgr-mir-378

Accession

MI0020515

Description

Cricetulus griseus cgr-mir-378 precursor miRNA

Sequence

4223602 reads, 58625 reads per million, 6 experiments

cacccagggCUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcugaguggag
(((.((((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))).)))...

Structure

---   c    g  C              U    gu acc 
   cac cagg CU CUGACUCCAGGUCC GUGU  u   u
   ||| |||| || |||||||||||||| ||||  |    
   gug gucC GA GACUGAGGUUCAGG CAcg  a   c
gag   a    G  A              U    au aag 

Annotation confidence Low

Genome context

JH000650.1: 40907-40985 [+]

Mature cgr-miR-378-5p

• Accession: MIMAT0023943
• Description: Cricetulus griseus cgr-miR-378-5p mature miRNA
• Sequence: 10 - CUCCUGACUCCAGGUCCUGUGU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-378-3p

• Accession: MIMAT0023944
• Description: Cricetulus griseus cgr-miR-378-3p mature miRNA
• Sequence: 48 - ACUGGACUUGGAGUCAGAAGGC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75